CAZyme Information: FOYG_07509-t42_1-p1

Basic Information

• Species: Fusarium oxysporum
• Lineage: Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium oxysporum
• CAZyme ID: FOYG_07509-t42_1-p1
• CAZy Family: GH16
• CAZyme Description: murein transglycosylase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
548		57804.57	5.7210

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_FoxysporumNRRL32931	17642	660029	362	17280

• Gene Location: location=JH717843.1:321658-323548(+)

Full Sequence      

MRHSFISALIAVGSAVQAAAQLNGKVGPLTTPSAKAAIKTCNIVDYGAKANAKTDNGPAI
QKAWNDCRTSGGEVYVPEGDYGLGTWVTLTSSKPMSFRLDGIIYRIGTGGGNMFMFKHLE
DFEFYSSTSKGAIQGYGYEFHKKDEYGPRILRFADVKSFSIHDVALVDSPAFHFSIDTCS
DGEVYNMAIHGGNRGGLDGIDVWGTNIHIHDVEVSNKDECVTVKNPSDHLLIENIFCNWS
GGCAMGSLATDTDIHDIEYNNIYTQRSNQMYMFKSYGGSGTVNNVALKNFAGHSNAYTLD
LDAQWSSMKPIAGDGILYSNMTFSGWSGTCADGHQRGPIKFNCPADVPCTDMQVDDFTVG
SNKGDTVEHVCKNAYGSGACLKKGDGGAYTTTQTVDAASAATPTMDGEIENGLGLTVSIA
IPTIRPSFFPGVAAISPRMADASKAQATARVETSVPTEAETAADTSAVADVTAPINTSAA
SSTSAAVSEVTPVATSAASTDAPNSLLPEEHSTLETAVKASKTAKAAAVTSTVLPKIPSC
KAKRRRSI

Enzyme Prediction     

EC	3.2.1.171:11

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	66	375	6.4e-47	0.9661538461538461

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
215540	PLN03010	4.33e-19	42	376	48	391	polygalacturonase
215426	PLN02793	3.12e-17	5	377	20	412	Probable polygalacturonase
177865	PLN02218	3.44e-17	29	374	62	418	polygalacturonase ADPG
165802	PLN02155	9.12e-15	42	376	29	380	polygalacturonase
395231	Glyco_hydro_28	3.05e-14	148	380	85	321	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QKD53836.1|GH28	0.0	1	548	1	548
QGI94855.1|GH28	0.0	1	548	1	547
QGI63973.1|GH28	0.0	1	548	1	547
CCT68019.1|GH28	0.0	1	548	1	547
QGI81242.1|GH28	0.0	1	548	1	547

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	2.16e-176	21	432	1	414	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
4C2L_A	3.25e-15	48	373	23	373	Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5ARE6|RHGA_EMENI	5.04e-188	5	466	2	474	Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2
sp|A2QYE5|RHGA_ASPNC	1.96e-177	21	445	19	446	Probable rhamnogalacturonase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rhgA PE=3 SV=1
sp|Q00001|RHGA_ASPAC	2.58e-176	1	432	1	432	Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
sp|B8NK45|RHGA_ASPFN	1.33e-175	3	431	2	433	Probable rhamnogalacturonase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rhgA PE=3 SV=1
sp|P87160|RHGA_ASPNG	3.66e-175	21	445	19	446	Rhamnogalacturonase A OS=Aspergillus niger OX=5061 GN=rhgA PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000359	0.999613	CS pos: 18-19. Pr: 0.9768

TMHMM  Annotations     

There is no transmembrane helices in FOYG_07509-t42_1-p1.