logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: FOIG_16166-t36_1-p1

You are here: Home > Sequence: FOIG_16166-t36_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium odoratissimum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium odoratissimum
CAZyme ID FOIG_16166-t36_1-p1
CAZy Family GT39
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
640 70342.69 5.3785
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_FodoratissimumNRRL54006 16975 1089451 341 16634
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in FOIG_16166-t36_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 23 634 8e-93 0.9911971830985915

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 5.74e-52 38 636 20 533
choline dehydrogenase; Validated
225186 BetA 1.02e-51 37 639 21 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 3.56e-32 499 630 5 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 1.53e-17 289 633 235 574
Protein HOTHEAD
366272 GMC_oxred_N 2.08e-13 124 394 19 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640
0.0 1 640 1 640

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.28e-39 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
8.52e-39 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
8.52e-39 22 636 6 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
8.52e-39 18 636 1 562
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
9.72e-39 22 636 82 638
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.37e-50 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=betA PE=3 SV=1
2.96e-49 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1
7.55e-49 22 640 3 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1
2.69e-48 22 640 3 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1
9.72e-48 22 640 5 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000746 0.999238 CS pos: 15-16. Pr: 0.9755

TMHMM  Annotations      help

There is no transmembrane helices in FOIG_16166-t36_1-p1.