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CAZyme Information: FOC4_g10002715-t38_1-p1

You are here: Home > Sequence: FOC4_g10002715-t38_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium odoratissimum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium odoratissimum
CAZyme ID FOC4_g10002715-t38_1-p1
CAZy Family AA9
CAZyme Description Choline dehydrogenase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1030 113583.93 5.4657
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Fodoratissimumrace4 14596 N/A 137 14459
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC - -

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 435 1024 3.5e-83 0.9507042253521126
AA3 23 405 1.1e-58 0.5633802816901409

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
235000 PRK02106 2.24e-50 517 1026 83 533
choline dehydrogenase; Validated
225186 BetA 1.05e-48 432 1029 26 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
398739 GMC_oxred_C 5.52e-32 889 1020 5 143
GMC oxidoreductase. This domain found associated with pfam00732.
225186 BetA 8.22e-26 37 397 21 308
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 4.14e-25 38 394 20 301
choline dehydrogenase; Validated

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 430 1030 40 640
0.0 430 1030 40 640
0.0 430 1030 40 640
0.0 430 1030 40 640
0.0 430 1030 40 640

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.32e-33 514 1026 79 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
1.76e-33 514 1026 79 562
Chain A, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis],6ZH7_B Chain B, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
1.76e-33 514 1026 79 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRV_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRX_AAA Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis],6YRZ_AAA Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
1.76e-33 514 1026 79 562
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]
1.93e-33 514 1026 155 638
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.39e-41 518 1030 83 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5) OX=220664 GN=betA PE=3 SV=1
7.89e-41 435 1030 29 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=betA PE=3 SV=1
4.57e-40 518 1030 83 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) OX=216595 GN=betA PE=3 SV=1
4.63e-40 435 1030 29 537
Oxygen-dependent choline dehydrogenase OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=betA PE=3 SV=1
8.24e-40 518 1030 83 535
Oxygen-dependent choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000746 0.999238 CS pos: 15-16. Pr: 0.9755

TMHMM  Annotations      help

There is no transmembrane helices in FOC4_g10002715-t38_1-p1.