CAZyme Information: FOC4_g10001101-t38_1-p1

Basic Information

• Species: Fusarium odoratissimum
• Lineage: Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium odoratissimum
• CAZyme ID: FOC4_g10001101-t38_1-p1
• CAZy Family: AA3
• CAZyme Description: Polygalacturonase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
394		43607.08	4.7042

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Fodoratissimumrace4	14596	N/A	137	14459

• Gene Location: location=KB726994:77113-78546(+)

Full Sequence      

MSTNGSQIKTYAAPEGVAVADAFLIYARSVDSEPWIPVPTYAVDVAEVNTTRNEFDKHPI
SVASFDMDGPVEVQVKYTLNKVQSAAIRPKSLGIQAAIDGDNTITFSLDRPRDVMLEINQ
DNPNGGAILIERSENIVVENVTSLGATGFSLTTGEAKGVSISGYRSFSSHGNGDGVDLFC
SSDILVENCFLRNSDDTIAIYGHRWDYYGDSSNIVIRNCTLLPDIAHPIHMGTHGNPAKP
ETISGIHISNIDILDHYENQMWYQGCISLSAGDENLIEDVHIQDVRVERISKGQLVNMRV
MKNEMWTTAPGHGIRNVTLKDISLDVTNSQIVNPSQILGFDYTRKVENIVFENLNIGGQY
IHDGMEKPRWYMVADLVPMFINEHVTNVKFILTK

Enzyme Prediction     

No EC number prediction in FOC4_g10001101-t38_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	62	359	9.7e-36	0.8153846153846154

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
227721	Pgu1	3.74e-06	131	220	244	338	Polygalacturonase [Carbohydrate transport and metabolism].
395231	Glyco_hydro_28	9.32e-06	119	358	81	305	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
404168	Beta_helix	2.18e-04	122	220	20	109	Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.
215426	PLN02793	3.73e-04	117	291	166	331	Probable polygalacturonase
178580	PLN03003	0.002	127	250	140	256	Probable polygalacturonase At3g15720

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QKD61155.1|GH28	5.91e-268	1	394	1	477
ATZ46611.1|GH28	6.99e-183	6	394	5	480
ATZ46612.1|GH28	6.99e-183	6	394	5	480
CCD48265.1|GH28	6.99e-183	6	394	5	480
UQC76395.1|GH28	3.67e-153	8	390	6	485

PDB Hits     

FOC4_g10001101-t38_1-p1 has no PDB hit.

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|A1DBR6|PGLRD_NEOFI	5.26e-06	130	358	256	456	Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
sp|Q5AYH4|PGLRD_EMENI	9.72e-06	138	323	300	470	Probable endopolygalacturonase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000046	0.000005

TMHMM  Annotations     

There is no transmembrane helices in FOC4_g10001101-t38_1-p1.