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CAZyme Information: FOC1_g10005719-t38_1-p1

You are here: Home > Sequence: FOC1_g10005719-t38_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Fusarium oxysporum
Lineage Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium oxysporum
CAZyme ID FOC1_g10005719-t38_1-p1
CAZy Family GH16
CAZyme Description Putative pectin lyase F-2
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
548 KB730516|CGC1 56573.65 4.1420
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Foxysporumrace1 15626 1229664 188 15438
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in FOC1_g10005719-t38_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 109 294 1.2e-75 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 3.52e-43 108 297 3 190
Amb_all domain.
226384 PelB 1.28e-16 121 360 99 336
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 2.60e-16 118 293 29 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
395595 CBM_1 6.59e-14 505 533 1 29
Fungal cellulose binding domain.
197593 fCBD 2.46e-13 506 537 3 34
Fungal-type cellulose-binding domain. Small four-cysteine cellulose-binding domain of fungi

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 548 1 548
2.82e-317 1 548 1 609
7.51e-316 1 548 1 609
7.51e-316 1 548 1 609
5.32e-252 1 465 1 455

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.18e-65 21 340 3 322
Pectin Lyase B [Aspergillus niger]
5.41e-62 21 381 3 359
Pectin Lyase A [Aspergillus niger]
2.91e-61 21 381 3 359
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
5.71e-09 502 536 258 292
Apo Cel45A from Neurospora crassa OR74A [Neurospora crassa OR74A],6MVJ_A Cellobiose complex Cel45A from Neurospora crassa OR74A [Neurospora crassa OR74A]
4.69e-08 502 537 1 36
Chain A, Exoglucanase 1 [Trichoderma reesei]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.75e-96 14 387 16 386
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
8.56e-88 1 377 1 384
Probable pectin lyase F-1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-1 PE=3 SV=1
6.13e-86 7 387 10 389
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
6.13e-86 7 387 10 389
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
6.69e-85 14 384 16 385
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000274 0.999666 CS pos: 18-19. Pr: 0.9759

TMHMM  Annotations      help

There is no transmembrane helices in FOC1_g10005719-t38_1-p1.