dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: FGRAMPH1_01T27881-p1

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Basic Information help

Species

Fusarium graminearum

Lineage

Ascomycota; Sordariomycetes; ; Nectriaceae; Fusarium; Fusarium graminearum

CAZyme ID

FGRAMPH1_01T27881-p1

CAZy Family

PL42

CAZyme Description

unnamed protein product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
525		56228.58	4.2746

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_FgraminearumPH-1	14145	229533	2	14143

Gene Location

Full Sequence Download help

Enzyme Prediction help

EC	-	-

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
212030	LysM	4.68e-09	475	519	1	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
197609	LysM	1.04e-05	222	266	1	44	Lysin motif.
212030	LysM	8.19e-05	272	310	1	39	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
180536	PRK06347	3.28e-04	113	341	290	544	1,4-beta-N-acetylmuramoylhydrolase.
396179	LysM	4.84e-04	223	267	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start
0.0	1	525	1	525
0.0	1	525	1	525
6.70e-282	1	518	1	488
6.70e-282	1	518	1	488
2.85e-177	25	523	43	527

PDB Hits help

FGRAMPH1_01T27881-p1 has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
8.35e-26	270	523	155	373	LysM domain-containing protein ARB_05157 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_05157 PE=1 SV=1
7.81e-22	35	525	39	538	LysM domain-containing protein ARB_00327 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_00327 PE=3 SV=2
6.43e-14	465	523	379	437	Probable peptidoglycan-N-acetylglucosamine deacetylase ARB_03699 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_03699 PE=1 SV=2
4.79e-09	468	523	125	181	LysM domain-containing protein ARB_03438 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_03438 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.990758	0.009265

TMHMM Annotations help

There is no transmembrane helices in FGRAMPH1_01T27881-p1.