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CAZyme Information: EPrPVT00000023200-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytopythium vexans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans | |||||||||||
| CAZyme ID | EPrPVT00000023200-p1 | |||||||||||
| CAZy Family | GT41 | |||||||||||
| CAZyme Description | Pectin lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 175 | 291 | 3.3e-46 | 0.6310160427807486 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 8.82e-18 | 124 | 289 | 2 | 185 | Amb_all domain. |
| 366158 | Pec_lyase_C | 6.92e-07 | 111 | 288 | 5 | 209 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| 226384 | PelB | 1.57e-05 | 123 | 303 | 84 | 286 | Pectate lyase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.17e-155 | 23 | 375 | 21 | 398 | |
| 2.61e-127 | 22 | 375 | 20 | 398 | |
| 3.70e-127 | 22 | 375 | 20 | 398 | |
| 5.25e-127 | 22 | 375 | 20 | 398 | |
| 4.25e-126 | 18 | 375 | 16 | 399 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.95e-59 | 26 | 327 | 4 | 313 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 5.43e-59 | 26 | 327 | 4 | 313 | Pectin Lyase A [Aspergillus niger] |
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| 9.76e-56 | 27 | 332 | 5 | 319 | Pectin Lyase B [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.07e-68 | 18 | 332 | 18 | 341 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
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| 3.07e-68 | 18 | 332 | 18 | 341 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
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| 8.16e-66 | 16 | 327 | 12 | 332 | Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2 |
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| 7.10e-65 | 14 | 327 | 11 | 333 | Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1 |
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| 1.45e-64 | 1 | 327 | 1 | 334 | Probable pectin lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=pelA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000200 | 0.999769 | CS pos: 23-24. Pr: 0.9803 |