CAZyme Information: EPrPVT00000022007-p1

Basic Information

• Species: Phytopythium vexans
• Lineage: Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
• CAZyme ID: EPrPVT00000022007-p1
• CAZy Family: GH81
• CAZyme Description: Pectin lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
761	PvexDAOMBR484_SC0771|CGC1	81545.88	4.6131

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PvexansDAOMBR484	11991	1223560	34	11957

• Gene Location: location=PvexDAOMBR484_SC0771:940-4054(+)

Full Sequence      

DAPGFAAGTTGGGDTDPVYPTTIDELSSYLSDDEPRVIVLQQTFNFTGSEGTTTETGCRS
SNAATCLAKNNGYSPQDTITDDCSDGTEISVTYDNAAKNPLTVASNKTLVGEGTSGVLYG
KGLLVTGSNVIVQNIYITQLNPQYVWGGDAITLRGEGDAAPSNIWIDRVKVSNVGRQMIV
INFSGVTKTTVSNSHFDGNTLYSSSCDGHHYWGFLLYGTTLQLSATIGRSCEVNTVSADS
GYLVGYSEANVQSKMSSYTTEVGGYAVAAAAKLTLATSNYGVGELSSATSTTSTSTSTSV
SAASDADVGADADKEVESEADTEVESDADTEVESEADDVETAVDDVETAAETTAPTSATN
GCKVRQRRRQTKLNWDHLTMSGRSPKVGGTDDYEVIMHAVNNYFDDITGHAFDVSIIGYV
LAEGNYFNAVKQPNLNDTDGSLWVPTAARDCSATIGRDCVLNTVSADSGYLVGYNEANVQ
SKIAPYKSEIGGFATAPAAKLTLATKNYGVDCCGHHGKRFNHAQSSSAHTGSFKNCRRGH
TAAPTSMAFFGLTGLGSQGSFDCAKETPLHVFEAPDFQHAFMQTYCPGFTLYSESDDEVA
AARATLSVATITYSQIPEALQRLYKCPNGLDNVPKSTYHLVGVEFEPFRVPEVPITLVEF
QEGMARASQASEVLQAQHKQREYLKDGVVSREYVSGLEFRAAMSKHTRMEKDPRDKLLIP
VTDTHTLGWRDPTVLTVRRPNKSCDETKYASAMVKAGVYYY

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	91	226	3e-55	0.7005347593582888

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	6.41e-23	89	218	2	123	Amb_all domain.
226384	PelB	2.29e-10	85	215	82	217	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	1.54e-05	76	172	5	98	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.
183731	PRK12766	6.12e-04	306	372	54	116	50S ribosomal protein L32e; Provisional

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19253.2|PL1_4	1.85e-121	2	510	30	401
ACR19250.1|PL1_4	5.05e-116	4	517	198	565
ACR19257.1|PL1_4	7.23e-112	2	244	25	284
ACR19256.1|PL1_4	3.37e-104	3	457	37	346
AHX74068.1|PL1_4	4.93e-94	2	510	27	396

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	2.31e-60	2	484	7	334	Pectin Lyase B [Aspergillus niger]
1IDJ_A	6.16e-60	2	481	7	339	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	5.88e-58	2	481	7	339	Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q5BA61|PELB_EMENI	8.03e-64	2	481	26	359	Pectin lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pelB PE=2 SV=1
sp|Q2TXM4|PELA_ASPOR	1.10e-61	2	486	26	363	Probable pectin lyase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelA PE=3 SV=1
sp|Q0CFF7|PELF1_ASPTN	3.74e-61	4	486	27	362	Probable pectin lyase F-1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-1 PE=3 SV=1
sp|Q0CYL8|PELA_ASPTN	5.49e-61	2	481	26	358	Probable pectin lyase A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelA PE=3 SV=1
sp|Q00374|PELA_COLGL	1.54e-60	2	219	28	240	Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000017	0.000023

TMHMM  Annotations     

There is no transmembrane helices in EPrPVT00000022007-p1.