CAZyme Information: EPrPVT00000021749-p1

Basic Information

• Species: Phytopythium vexans
• Lineage: Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
• CAZyme ID: EPrPVT00000021749-p1
• CAZy Family: GH81
• CAZyme Description: Pectin lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
504	PvexDAOMBR484_SC0718|CGC1	52267.40	3.9480

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PvexansDAOMBR484	11991	1223560	34	11957

• Gene Location: location=PvexDAOMBR484_SC0718:1869-3409(-)

Full Sequence      

MLTRFKSFLAALALAAAAVSAYDTGEAPGFAAGTTGGGDAEPVYPTTIDELSTYLSDDVA
RVIVLQQKFDFTGTEDSTTETGCRSSFATECLAKNNGYKSQDTILMDGDTSMTSTGGCTD
GTAVEVTYDNAAKNPLKVGSNKTLVGEGTSGILYGKGLIITGSNVIVQNVYITQLNPHLV
WGGDAITMRGSGDEAPENIWIDHVKVSDVGRQMVVINFSGVTKTTISNSDFDGETDYSAS
CDGHHYWGFLLYGKTLQLSFVNNYLHSFSGRGPKIGXXXXCWLRPNLDDTDGNFWVPASA
GDCSATIGRNCEVNTVSSDSGTLAGYNEANVQSKMSSYTTEVGGYAVTAAAKFSIASSNY
GVGELSGSSSSSTSTATTTATTNSTSSSVEGEADVEDDYEASTAASVDAEAETEAETETE
AETETTSSVGEDADAETETEASTASSSSSSTTTTTTTTTSSSAGADSETETTEAPVAAVT
EAPAAAEAPVSTASSCKVRQRRRD

Enzyme Prediction     

EC	4.2.2.10:1

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL1	126	277	1.3e-65	0.786096256684492

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
214765	Amb_all	4.29e-26	126	275	2	151	Amb_all domain.
226384	PelB	1.67e-10	136	275	97	236	Pectate lyase [Carbohydrate transport and metabolism].
366158	Pec_lyase_C	7.19e-07	121	273	15	174	Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ACR19253.2|PL1_4	1.59e-141	12	369	19	408
ACR19257.1|PL1_4	3.58e-140	6	276	2	275
ACR19250.1|PL1_4	2.17e-120	25	368	194	564
ACR19254.1|PL1_4	7.95e-117	8	365	8	398
AHX74068.1|PL1_4	3.64e-115	9	366	9	400

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1QCX_A	4.75e-64	25	275	5	240	Pectin Lyase B [Aspergillus niger]
1IDJ_A	1.20e-59	24	275	4	240	Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]
1IDK_A	2.50e-58	24	340	4	345	Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q0CFF7|PELF1_ASPTN	5.08e-73	7	276	5	258	Probable pectin lyase F-1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-1 PE=3 SV=1
sp|Q8NJK6|PELF_ASPNG	1.07e-71	2	369	1	387	Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
sp|A2R6A1|PELF_ASPNC	1.07e-71	2	369	1	387	Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
sp|Q00374|PELA_COLGL	2.01e-69	10	275	9	261	Pectin lyase OS=Colletotrichum gloeosporioides OX=474922 GN=PNLA PE=3 SV=1
sp|Q0CZD4|PELF2_ASPTN	5.21e-69	2	301	1	287	Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000233	0.999727	CS pos: 21-22. Pr: 0.9757

TMHMM  Annotations     

There is no transmembrane helices in EPrPVT00000021749-p1.