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CAZyme Information: EPrPVT00000021227-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytopythium vexans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans | |||||||||||
| CAZyme ID | EPrPVT00000021227-p1 | |||||||||||
| CAZy Family | GH72 | |||||||||||
| CAZyme Description | Transmembrane and TPR repeat-containing protein 4. | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 2.4.1.109:4 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GT105 | 87 | 231 | 1.1e-32 | 0.9312977099236641 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 400627 | DUF1736 | 9.77e-17 | 277 | 336 | 11 | 70 | Domain of unknown function (DUF1736). This domain of unknown function is found in various hypothetical metazoan proteins. |
| 274350 | PEP_TPR_lipo | 5.29e-07 | 474 | 699 | 353 | 597 | putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| 223533 | TPR | 0.002 | 500 | 677 | 112 | 278 | Tetratricopeptide (TPR) repeat [General function prediction only]. |
| 276809 | TPR | 0.003 | 471 | 545 | 22 | 97 | Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes. |
| 276809 | TPR | 0.006 | 591 | 696 | 4 | 96 | Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.57e-65 | 11 | 549 | 4 | 512 | |
| 1.24e-64 | 18 | 516 | 26 | 515 | |
| 2.99e-64 | 2 | 515 | 1 | 478 | |
| 5.30e-64 | 18 | 507 | 25 | 506 | |
| 5.72e-63 | 13 | 494 | 24 | 492 |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.02e-63 | 18 | 507 | 25 | 506 | Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1 |
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| 1.02e-63 | 13 | 494 | 24 | 492 | Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2 |
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| 2.07e-63 | 6 | 549 | 29 | 580 | Protein O-mannosyl-transferase Tmtc3 OS=Drosophila melanogaster OX=7227 GN=Tmtc3 PE=2 SV=1 |
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| 1.20e-62 | 8 | 549 | 7 | 512 | Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2 |
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| 2.05e-61 | 2 | 549 | 6 | 517 | Protein O-mannosyl-transferase TMTC3 OS=Mus musculus OX=10090 GN=Tmtc3 PE=1 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.948350 | 0.051666 |
TMHMM Annotations download full data without filtering help
| Start | End |
|---|---|
| 13 | 35 |
| 96 | 118 |
| 138 | 155 |
| 165 | 187 |
| 200 | 222 |
| 242 | 264 |
| 290 | 309 |
| 329 | 351 |
| 363 | 385 |
| 389 | 411 |
| 436 | 455 |