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CAZyme Information: EPrPVT00000020703-p1

You are here: Home > Sequence: EPrPVT00000020703-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytopythium vexans
Lineage Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
CAZyme ID EPrPVT00000020703-p1
CAZy Family GH5
CAZyme Description Endopolygalacturonase 3
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
296 30403.07 7.8866
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PvexansDAOMBR484 11991 1223560 34 11957
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 43 282 9.6e-46 0.7323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 5.97e-48 46 283 1 240
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 4.22e-16 98 231 115 244
Probable polygalacturonase At3g15720
227721 Pgu1 2.89e-13 89 271 191 402
Polygalacturonase [Carbohydrate transport and metabolism].
215540 PLN03010 3.52e-12 96 283 139 311
polygalacturonase
215426 PLN02793 1.21e-10 96 259 143 305
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.95e-125 1 295 1 361
8.12e-125 4 295 3 360
4.82e-124 11 295 12 361
1.42e-123 11 295 12 362
1.95e-123 11 295 12 361

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.73e-49 29 296 1 338
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
4.35e-49 26 295 6 344
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
4.35e-49 26 295 6 344
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
3.00e-47 29 295 1 336
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
6.89e-46 31 259 4 240
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.19e-50 26 295 25 364
Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1
3.20e-50 44 295 62 380
Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1
4.30e-50 31 259 39 287
Polygalacturonase OS=Penicillium expansum OX=27334 GN=PEPG1 PE=3 SV=1
1.23e-48 8 295 9 376
Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1
7.66e-48 17 295 15 367
Endopolygalacturonase I OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaI PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000189 0.999793 CS pos: 24-25. Pr: 0.8890

TMHMM  Annotations      help

There is no transmembrane helices in EPrPVT00000020703-p1.