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CAZyme Information: EPrPVT00000020699-p1

You are here: Home > Sequence: EPrPVT00000020699-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytopythium vexans
Lineage Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
CAZyme ID EPrPVT00000020699-p1
CAZy Family GH5
CAZyme Description Polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
264 PvexDAOMBR484_SC0551|CGC1 27516.01 8.0404
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PvexansDAOMBR484 11991 1223560 34 11957
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:10

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 43 260 7e-48 0.6707692307692308

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 8.57e-60 46 262 1 221
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
227721 Pgu1 4.57e-20 89 262 191 380
Polygalacturonase [Carbohydrate transport and metabolism].
178580 PLN03003 1.07e-19 46 262 51 273
Probable polygalacturonase At3g15720
215426 PLN02793 5.22e-19 45 262 79 312
Probable polygalacturonase
215120 PLN02188 2.55e-16 98 261 124 289
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.93e-124 11 264 12 267
7.36e-122 4 264 3 266
1.02e-121 31 264 63 296
1.02e-121 31 264 63 296
1.08e-121 11 264 12 266

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
8.22e-62 29 262 1 237
Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini]
1.03e-57 26 262 6 244
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.03e-57 26 262 6 244
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
2.34e-57 29 262 1 236
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
2.82e-56 31 259 4 238
Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.16e-63 7 262 6 261
Polygalacturonase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PGU1 PE=1 SV=1
1.48e-61 26 262 25 264
Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1
2.38e-60 31 262 39 279
Polygalacturonase OS=Penicillium expansum OX=27334 GN=PEPG1 PE=3 SV=1
5.58e-58 1 262 1 263
Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1
1.55e-57 8 262 9 276
Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000186 0.999788 CS pos: 24-25. Pr: 0.8982

TMHMM  Annotations      help

There is no transmembrane helices in EPrPVT00000020699-p1.