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CAZyme Information: EPrPVT00000019789-p1

You are here: Home > Sequence: EPrPVT00000019789-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytopythium vexans
Lineage Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
CAZyme ID EPrPVT00000019789-p1
CAZy Family GH47
CAZyme Description Carbohydrate-binding protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1869 203011.61 7.4430
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PvexansDAOMBR484 11991 1223560 34 11957
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 23 553 2.2e-115 0.968978102189781

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
223562 Uup 7.95e-111 939 1615 6 500
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].
215558 PLN03073 1.02e-75 935 1614 176 687
ABC transporter F family; Provisional
236729 PRK10636 1.21e-54 955 1621 16 497
putative ABC transporter ATP-binding protein; Provisional
237894 PRK15064 2.03e-52 962 1653 23 517
ABC transporter ATP-binding protein; Provisional
236861 PRK11147 9.77e-51 1143 1613 119 499
ABC transporter ATPase component; Reviewed

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.89e-221 27 809 22 827
6.32e-211 27 802 22 827
6.34e-206 24 637 24 638
1.78e-158 23 556 18 550
7.88e-150 27 537 20 526

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.20e-57 23 555 2 539
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
3.61e-57 29 555 3 534
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
3.90e-48 934 1614 2 503
Crystal structure of ATP-bound human ABCF1 [Homo sapiens],5ZXD_B Crystal structure of ATP-bound human ABCF1 [Homo sapiens]
4.49e-44 955 1621 12 498
Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state with Arb1) [Saccharomyces cerevisiae]
2.94e-37 28 565 229 773
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.81e-58 935 1626 161 691
ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 SV=1
2.19e-57 932 1625 188 721
Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GCN20 PE=1 SV=1
3.00e-57 954 1614 188 682
ABC transporter F family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCF3 PE=1 SV=1
3.26e-56 954 1615 196 697
Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC29A3.09c PE=3 SV=1
5.73e-55 23 555 229 766
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.038101 0.961878 CS pos: 25-26. Pr: 0.8354

TMHMM  Annotations      help

There is no transmembrane helices in EPrPVT00000019789-p1.