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CAZyme Information: EPrPVT00000018554-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytopythium vexans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans | |||||||||||
| CAZyme ID | EPrPVT00000018554-p1 | |||||||||||
| CAZy Family | GH3 | |||||||||||
| CAZyme Description | Pectin lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.10:1 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 124 | 314 | 5.9e-75 | 0.9893048128342246 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 9.03e-35 | 122 | 312 | 2 | 186 | Amb_all domain. |
| 226384 | PelB | 1.47e-14 | 41 | 319 | 48 | 280 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 5.58e-06 | 138 | 312 | 32 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 6.52e-134 | 29 | 398 | 22 | 400 | |
| 1.50e-132 | 29 | 398 | 22 | 400 | |
| 1.83e-128 | 29 | 365 | 22 | 368 | |
| 1.82e-124 | 50 | 365 | 134 | 459 | |
| 1.45e-122 | 32 | 398 | 25 | 399 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.78e-64 | 32 | 353 | 5 | 319 | Pectin Lyase A [Aspergillus niger] |
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| 4.05e-62 | 32 | 353 | 5 | 319 | Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger] |
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| 5.21e-59 | 31 | 355 | 4 | 322 | Pectin Lyase B [Aspergillus niger] |
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| 1.34e-08 | 139 | 315 | 78 | 249 | Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.91e-77 | 32 | 355 | 24 | 340 | Probable pectin lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=pelB PE=3 SV=2 |
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| 5.97e-76 | 32 | 361 | 24 | 346 | Probable pectin lyase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelD PE=3 SV=1 |
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| 5.97e-76 | 32 | 361 | 24 | 346 | Pectin lyase 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pel2 PE=1 SV=1 |
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| 2.44e-71 | 14 | 375 | 8 | 373 | Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1 |
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| 2.44e-71 | 14 | 375 | 8 | 373 | Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000207 | 0.999762 | CS pos: 23-24. Pr: 0.9618 |