logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: EPrPVT00000017445-p1

You are here: Home > Sequence: EPrPVT00000017445-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytopythium vexans
Lineage Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
CAZyme ID EPrPVT00000017445-p1
CAZy Family GH17
CAZyme Description Carbohydrate-binding protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
285 30382.40 8.9875
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PvexansDAOMBR484 11991 1223560 34 11957
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 19 285 5.7e-64 0.4781021897810219

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 1.80e-16 20 285 1 269
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 8.17e-14 23 285 2 265
choline dehydrogenase; Validated
366272 GMC_oxred_N 8.29e-09 107 284 15 194
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
224154 COG1233 6.52e-06 27 61 4 37
Phytoene dehydrogenase-related protein [Secondary metabolites biosynthesis, transport and catabolism].
235774 PRK06292 1.22e-05 25 69 2 40
dihydrolipoamide dehydrogenase; Validated

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.56e-102 27 285 29 283
9.44e-82 21 285 18 287
6.37e-81 9 285 4 283
1.62e-78 27 285 24 285
1.57e-74 23 285 20 285

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.19e-40 20 285 1 264
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.53e-39 27 285 3 259
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
2.25e-30 27 258 8 231
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
3.47e-30 27 258 230 453
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
2.52e-23 27 285 230 487
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.96e-39 20 285 228 491
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
1.08e-13 23 285 3 262
4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
2.96e-11 26 285 4 262
Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB1310 PE=3 SV=1
2.96e-11 26 285 4 262
Uncharacterized GMC-type oxidoreductase MT1316 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT1316 PE=3 SV=1
2.96e-11 26 285 4 262
Uncharacterized GMC-type oxidoreductase Rv1279 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1279 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000403 0.999584 CS pos: 24-25. Pr: 0.9710

TMHMM  Annotations      help

There is no transmembrane helices in EPrPVT00000017445-p1.