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CAZyme Information: EPrPVT00000017371-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Phytopythium vexans | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans | |||||||||||
| CAZyme ID | EPrPVT00000017371-p1 | |||||||||||
| CAZy Family | GH17 | |||||||||||
| CAZyme Description | Endo-beta-1,6-galactanase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.164:3 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH30 | 411 | 866 | 6e-128 | 0.9802631578947368 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 238121 | WD40 | 7.16e-25 | 32 | 345 | 11 | 288 | WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. |
| 405300 | Glyco_hydr_30_2 | 1.13e-24 | 417 | 740 | 18 | 357 | O-Glycosyl hydrolase family 30. |
| 225201 | WD40 | 1.74e-20 | 33 | 340 | 68 | 349 | WD40 repeat [General function prediction only]. |
| 227807 | XynC | 3.60e-15 | 506 | 872 | 88 | 432 | O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis]. |
| 225201 | WD40 | 2.29e-14 | 33 | 305 | 201 | 441 | WD40 repeat [General function prediction only]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.09e-176 | 370 | 872 | 4 | 500 | |
| 3.10e-130 | 401 | 872 | 35 | 498 | |
| 8.25e-127 | 378 | 872 | 10 | 499 | |
| 8.25e-127 | 378 | 872 | 10 | 499 | |
| 2.50e-125 | 380 | 872 | 12 | 499 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.37e-07 | 114 | 337 | 139 | 369 | Structure of the human THO - UAP56 complex [Homo sapiens],7APK_K Structure of the human THO - UAP56 complex [Homo sapiens],7APK_c Structure of the human THO - UAP56 complex [Homo sapiens],7APK_k Structure of the human THO - UAP56 complex [Homo sapiens] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.70e-102 | 371 | 868 | 1 | 473 | Endo-beta-1,6-galactanase OS=Hypocrea rufa OX=5547 GN=6GAL PE=1 SV=1 |
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| 3.69e-57 | 8 | 345 | 3 | 307 | WD repeat-containing protein 82 OS=Danio rerio OX=7955 GN=wdr82 PE=2 SV=1 |
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| 5.08e-57 | 8 | 345 | 3 | 307 | WD repeat-containing protein 82-A OS=Xenopus laevis OX=8355 GN=wdr82-a PE=2 SV=1 |
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| 9.64e-57 | 8 | 345 | 3 | 307 | WD repeat-containing protein 82-B OS=Xenopus laevis OX=8355 GN=wdr82-b PE=2 SV=1 |
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| 9.64e-57 | 8 | 345 | 3 | 307 | WD repeat-containing protein 82 OS=Gallus gallus OX=9031 GN=WDR82 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000063 | 0.000001 |