CAZyme Information: EPrPVT00000016115-p1

Basic Information

• Species: Phytopythium vexans
• Lineage: Oomycota; NA; ; Pythiaceae; Phytopythium; Phytopythium vexans
• CAZyme ID: EPrPVT00000016115-p1
• CAZy Family: CE4
• CAZyme Description: ER degradation-enhancing alpha-mannosidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
781	PvexDAOMBR484_SC0120|CGC1	85119.39	6.0494

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_PvexansDAOMBR484	11991	1223560	34	11957

• Gene Location: location=PvexDAOMBR484_SC0120:13632-15977(+)

Full Sequence      

MRGVGRRAVEVVVALLLCVVGLLAIPANAVIHDAERRHLQQQARDMFYHGYRSYMEHAFP
WDELKPLSCAPRRWDQRERGDLDDVLGGFSLTLVDSLDMLAVVGDREEFARAVQLVVSSV
RFDRDVTVSVFESTIRVIGGLVSAHMLASPEHQGVLTSDEYDGELLDLAIDLGNRMLPAF
ETPTGMPMHRVNLKHGIASLDAKTRASSAITCPAAAGSLLVELSYLSRLSGDPVFEDKAR
VAVKALWARRSSLNLLGSSISVDSGAWMHSHVGIGAGLDSYFEYLLKYHLVSGDSAWLRM
FNQSYEAVETHINHDDMHIEVDMNAGRQAVRSRRVSALQAFWPGLQVLAGDVSGAIRSHE
KLFALWEKFGAMPELFDLGGDGSVISWARSSPLRPELIESTYHLYQATRDHRYLKIGRKL
LEDMQRVSRVECGYAAVGNIYTLAVEDRMDSYFLSETVKYLYLLFSDTPDVIVPAMPYPN
TTRTAESICRRSQGTGSRGIIDEEEDEIVSGISAELDHSTAAPVNNCRCGNSSRTNSSTE
SIRSGHTLSSRPLKASDVVFSTEGHVLMLGSTLFRRESDVSASGTGEVSKCQNGKAQIAK
RNAELAPALAQAAVQVGVSVRRGNAHVLTLVASPANFGPSVTFLGHVDAPLALYSSEIGD
ACVELSRSLASQVAGKLVMVTRGTCSFSEKALILQEAGAVGVIVINSKAAKAKHPDRMYV
VTDDAEHHGRQVKIPVVLVSREDATSLHRSAVVVQQSDSDEIDGEDDADAPLVASLSPWL
Y

Enzyme Prediction     

EC	3.2.1.113:20

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH47	46	472	4.1e-130	0.9618834080717489

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
396217	Glyco_hydro_47	3.40e-140	46	472	1	437	Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
240427	PTZ00470	1.52e-78	33	474	69	503	glycoside hydrolase family 47 protein; Provisional
240122	PA_subtilisin_1	6.16e-15	634	747	2	104	PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
238300	PA	4.45e-13	633	751	12	116	PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2.
239041	PA_EDEM3_like	1.87e-12	632	742	2	108	PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
CCA23124.1|GH47	3.13e-254	32	781	23	727
AIG56058.1|GH47	2.08e-239	7	760	8	687
AGB92969.1|GH47	9.44e-133	33	739	44	738
AAM50976.1|GH47	6.57e-132	33	739	44	747
NP_609611.1|GH47	6.57e-132	33	739	44	747

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5KIJ_A	4.66e-50	40	472	6	435	Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase and Man9GlcNAc2-PA complex [Homo sapiens]
5KK7_A	4.97e-50	40	472	6	435	Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase T688A mutant and Thio-disaccharide substrate analog complex [Homo sapiens],5KK7_B Crystal structure of the class I human endoplasmic reticulum 1,2-alpha-mannosidase T688A mutant and Thio-disaccharide substrate analog complex [Homo sapiens]
1FMI_A	5.30e-50	40	472	11	440	Crystal Structure Of Human Class I Alpha1,2-Mannosidase [Homo sapiens]
1FO2_A	5.53e-50	40	472	11	440	Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With 1-Deoxymannojirimycin [Homo sapiens],1FO3_A Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With Kifunensine [Homo sapiens]
1X9D_A	2.54e-49	40	472	89	518	Crystal Structure Of Human Class I alpha-1,2-Mannosidase In Complex With Thio-Disaccharide Substrate Analogue [Homo sapiens]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q9BZQ6|EDEM3_HUMAN	1.07e-120	35	747	48	776	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Homo sapiens OX=9606 GN=EDEM3 PE=1 SV=2
sp|Q2HXL6|EDEM3_MOUSE	7.86e-120	35	747	49	777	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Mus musculus OX=10090 GN=Edem3 PE=1 SV=2
sp|Q6GQB9|EDEM3_XENLA	2.01e-119	28	742	27	758	ER degradation-enhancing alpha-mannosidase-like protein 3 OS=Xenopus laevis OX=8355 GN=edem3 PE=2 SV=2
sp|Q9FG93|MNS4_ARATH	2.23e-118	35	465	36	445	Alpha-mannosidase I MNS4 OS=Arabidopsis thaliana OX=3702 GN=MNS4 PE=1 SV=1
sp|Q925U4|EDEM1_MOUSE	1.21e-114	36	482	122	574	ER degradation-enhancing alpha-mannosidase-like protein 1 OS=Mus musculus OX=10090 GN=Edem1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000245	0.999726	CS pos: 29-30. Pr: 0.9760

TMHMM  Annotations     

Start	End
9	31