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CAZyme Information: EPrPRT00000024408-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pythium arrhenomanes | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Pythium; Pythium arrhenomanes | |||||||||||
| CAZyme ID | EPrPRT00000024408-p1 | |||||||||||
| CAZy Family | GT48 | |||||||||||
| CAZyme Description | Carbohydrate-binding protein. | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 1.1.99.18:3 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 24 | 311 | 1.1e-71 | 0.5127737226277372 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 225186 | BetA | 3.78e-18 | 51 | 315 | 27 | 291 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| 235000 | PRK02106 | 7.80e-17 | 49 | 318 | 24 | 294 | choline dehydrogenase; Validated |
| 366272 | GMC_oxred_N | 3.71e-14 | 120 | 303 | 24 | 207 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| 215420 | PLN02785 | 5.80e-08 | 56 | 305 | 79 | 307 | Protein HOTHEAD |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.65e-104 | 29 | 318 | 22 | 314 | |
| 6.85e-104 | 29 | 316 | 20 | 308 | |
| 1.51e-102 | 29 | 318 | 22 | 312 | |
| 6.65e-97 | 18 | 318 | 15 | 310 | |
| 2.91e-95 | 21 | 316 | 14 | 310 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.61e-48 | 31 | 309 | 3 | 277 | Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium] |
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| 1.74e-48 | 31 | 309 | 8 | 282 | Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium] |
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| 1.51e-30 | 30 | 308 | 7 | 282 | Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides] |
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| 2.46e-30 | 30 | 308 | 229 | 504 | Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides] |
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| 3.33e-30 | 30 | 314 | 229 | 510 | Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 9.97e-47 | 31 | 309 | 235 | 509 | Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1 |
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| 3.79e-16 | 26 | 318 | 1 | 295 | Oxygen-dependent choline dehydrogenase OS=Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815) OX=391038 GN=betA PE=3 SV=1 |
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| 5.02e-16 | 31 | 316 | 2 | 287 | Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans OX=301 GN=alkJ PE=1 SV=1 |
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| 2.97e-15 | 31 | 316 | 3 | 290 | Oxygen-dependent choline dehydrogenase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=betA PE=3 SV=1 |
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| 3.13e-14 | 31 | 318 | 5 | 296 | Oxygen-dependent choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) OX=509169 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.085375 | 0.914581 | CS pos: 27-28. Pr: 0.6379 |