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CAZyme Information: EPrPRT00000018346-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pythium arrhenomanes | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Pythium; Pythium arrhenomanes | |||||||||||
| CAZyme ID | EPrPRT00000018346-p1 | |||||||||||
| CAZy Family | GH32 | |||||||||||
| CAZyme Description | Polygalacturonase. | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:10 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 43 | 350 | 8e-60 | 0.9384615384615385 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 1.63e-89 | 46 | 343 | 1 | 304 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215540 | PLN03010 | 5.98e-28 | 96 | 328 | 139 | 357 | polygalacturonase |
| 178580 | PLN03003 | 6.10e-28 | 46 | 325 | 51 | 337 | Probable polygalacturonase At3g15720 |
| 215120 | PLN02188 | 2.47e-25 | 98 | 325 | 124 | 354 | polygalacturonase/glycoside hydrolase family protein |
| 227721 | Pgu1 | 5.69e-25 | 89 | 334 | 191 | 454 | Polygalacturonase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.43e-136 | 29 | 349 | 142 | 462 | |
| 1.43e-136 | 29 | 349 | 142 | 462 | |
| 1.05e-135 | 29 | 349 | 142 | 462 | |
| 1.37e-135 | 29 | 349 | 150 | 470 | |
| 3.67e-135 | 29 | 349 | 32 | 352 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.81e-60 | 45 | 349 | 17 | 326 | Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini] |
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| 8.34e-59 | 28 | 349 | 8 | 333 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 8.34e-59 | 28 | 349 | 8 | 333 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.67e-58 | 29 | 349 | 1 | 325 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.23e-54 | 29 | 343 | 1 | 319 | Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.03e-61 | 28 | 350 | 27 | 354 | Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1 |
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| 1.30e-60 | 29 | 347 | 32 | 354 | Endopolygalacturonase I OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaI PE=1 SV=1 |
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| 1.30e-60 | 29 | 347 | 32 | 354 | Probable endopolygalacturonase I OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaI PE=3 SV=1 |
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| 1.30e-60 | 29 | 347 | 32 | 354 | Endopolygalacturonase B OS=Aspergillus flavus (strain ATCC MYA-384 / AF70) OX=1392242 GN=pgaB PE=2 SV=2 |
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| 6.70e-58 | 29 | 344 | 36 | 355 | Polygalacturonase OS=Penicillium janthinellum OX=5079 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000203 | 0.999763 | CS pos: 22-23. Pr: 0.9470 |