dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: EPrPRT00000016418-p1

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Basic Information help

Species

Pythium arrhenomanes

Lineage

Oomycota; NA; ; Pythiaceae; Pythium; Pythium arrhenomanes

CAZyme ID

EPrPRT00000016418-p1

CAZy Family

GH16

CAZyme Description

CG4050.

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
750	ParrATCC12531_SC00357\|CGC1	83306.16	8.2371

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_ParrhenomanesATCC12531	13857	1223556	52	13805

Gene Location

Full Sequence Download help

Enzyme Prediction help

EC	2.4.1.109:4

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT105	104	230	2.9e-34	0.9007633587786259

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
400627	DUF1736	3.18e-16	282	345	11	74	Domain of unknown function (DUF1736). This domain of unknown function is found in various hypothetical metazoan proteins.
276809	TPR	3.26e-07	651	742	3	95	Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.
276809	TPR	1.25e-06	605	710	4	96	Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.
223533	TPR	2.12e-05	587	745	114	265	Tetratricopeptide (TPR) repeat [General function prediction only].
315987	TPR_12	0.004	651	710	5	72	Tetratricopeptide repeat.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start
3.10e-66	24	526	1	490
2.31e-65	32	501	24	500
3.18e-65	32	501	24	500
3.82e-64	43	516	21	480
7.97e-64	43	747	21	699

PDB Hits help

EPrPRT00000016418-p1 has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
4.11e-66	32	501	24	500	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
2.67e-64	43	747	21	700	Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2
1.92e-63	43	526	49	558	Protein O-mannosyl-transferase Tmtc3 OS=Drosophila melanogaster OX=7227 GN=Tmtc3 PE=2 SV=1
6.28e-63	43	526	26	495	Protein O-mannosyl-transferase TMTC3 OS=Mus musculus OX=10090 GN=Tmtc3 PE=1 SV=2
2.83e-61	45	501	36	500	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.999988	0.000035

TMHMM Annotations download full data without filtering help

Start	End
360	382
389	411