CAZyme Information: EPrPRT00000014983-p1

Basic Information

• Species: Pythium arrhenomanes
• Lineage: Oomycota; NA; ; Pythiaceae; Pythium; Pythium arrhenomanes
• CAZyme ID: EPrPRT00000014983-p1
• CAZy Family: AA3
• CAZyme Description: Carbohydrate-binding protein.

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
819		84842.53	8.1558

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_ParrhenomanesATCC12531	13857	1223556	52	13805

• Gene Location: location=ParrATCC12531_SC00162:5885-8344(+)

Full Sequence      

MKVLPRSPLVSLLLLHGLSSTAVLAQQAYDVIVVGSGPGGLVAAEYLSRDASVSVLILEA
GLPSLAATGGSDGPGYAAAKGWTKFDIPGEYDSTIYNSANEKYRVDWITGPYMWLGKLVG
GCSSINAALYFRPSDDYVTSSKWPFSPARVASLLNENEQIHGVRDAPSPDGKYYNQEAYN
IVANAFTSKLGYSEKASLNDAAARNAKSKSFGHAPYAIKNGLRDSPATTFWGKMKNRPNV
KLVTSAMVDYVQQFKGKASGVVYNGNVQVPLTARGAVILAAGALSTPKVLIQSGIGPVDQ
LNLLNGRNDFPGVKASNANGGWATNANVGKNLFDTNVVFASFSHPQMRSFQYKNAPQGAI
DQFLNQGQTGPWASAGPVLIGYETYGVNGRAYDFQTTVLTAGFGSFYQNSNAFTTALYVN
NPESRAASGFSGDGKWNAFAQGSAYYGTSNDLAAMQSYATRVVNALQSVGATFLSAANGQ
SVADWVSSSSGLITHHFGGSCYASSDAGDTKRCADDKLRVLGTSNVFVGDGSAMRDGTVN
PYGXXXXGREVGEQVQTFLANGPTPPVGTCSIENGVDYVGNDLGNAPGATAEACCSICQS
SAGCNAFSWTSFNGGTCWLKCAKTTTKADASVRSATVSSAPPPTTAPPTPPPSGSCTIEN
DVDYSGNDLASALSGTAEGCCAICSGRSGCAAFTWTNYNGGTCWLKSAKGSTVAKSGARS
SVVVAPXXXXKGTTTAKSGAKSAVYNGGSPACTLVDGFDYYGNDVGSAPSSTANGCCAIC
RAKAGCKAFTWTNQDGGTCWLKSLQGSAIPKAGAVSGKV

Enzyme Prediction     

EC	1.1.99.18:3

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
AA3	22	542	1.8e-101	0.948905109489051

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
225186	BetA	6.30e-28	29	541	8	518	Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000	PRK02106	1.53e-18	25	313	2	292	choline dehydrogenase; Validated
366272	GMC_oxred_N	1.01e-13	116	297	24	204	GMC oxidoreductase. This family of proteins bind FAD as a cofactor.
238533	APPLE_Factor_XI_like	1.08e-12	753	819	7	72	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
238533	APPLE_Factor_XI_like	6.28e-11	661	724	11	73	Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
UIZ20744.1|AA3_1	2.88e-231	25	638	25	638
AIG55859.1|AA3_1	1.84e-226	16	819	7	811
AIG55821.1|AA3_1	5.73e-201	14	816	9	807
AIG55589.1|AA3_1	8.40e-158	9	538	3	526
AIG55820.1|AA3_1	4.67e-146	13	568	10	563

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1NAA_A	3.22e-46	29	563	3	541	Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
1KDG_A	3.50e-46	29	563	8	546	Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
4QI4_A	1.53e-34	28	592	7	575	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI6_A	5.70e-34	28	592	229	797	Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
4QI7_A	3.08e-33	18	587	219	792	Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q01738|CDH_PHACH	2.56e-44	29	563	235	773	Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
sp|A5WA97|BETA_PSEP1	6.27e-16	27	313	3	294	Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain ATCC 700007 / DSM 6899 / BCRC 17059 / F1) OX=351746 GN=betA PE=3 SV=1
sp|Q88CW6|BETA_PSEPK	6.27e-16	27	313	3	294	Oxygen-dependent choline dehydrogenase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=betA PE=3 SV=1
sp|Q988C9|4PADH_RHILO	7.75e-16	27	301	5	275	4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
sp|A8GBX9|BETA_SERP5	1.86e-15	29	304	3	281	Oxygen-dependent choline dehydrogenase OS=Serratia proteamaculans (strain 568) OX=399741 GN=betA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000640	0.999315	CS pos: 25-26. Pr: 0.9605

TMHMM  Annotations     

There is no transmembrane helices in EPrPRT00000014983-p1.