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CAZyme Information: EPrPIT00000024970-p1

You are here: Home > Sequence: EPrPIT00000024970-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium irregulare
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium irregulare
CAZyme ID EPrPIT00000024970-p1
CAZy Family GT41
CAZyme Description Pectin lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
408 43270.83 9.4627
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GirregulareDAOMBR486 13869 1223557 65 13804
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 128 323 4.5e-78 0.9893048128342246

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 9.82e-32 127 325 2 189
Amb_all domain.
226384 PelB 9.40e-12 102 353 51 306
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 9.24e-10 112 322 13 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.53e-187 27 407 56 432
4.34e-185 26 407 21 398
4.34e-185 26 407 21 398
6.15e-185 26 407 21 398
2.64e-177 27 407 56 432

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.00e-75 30 370 5 322
Pectin Lyase A [Aspergillus niger]
1.37e-72 30 390 5 345
Pectin Lyase B [Aspergillus niger]
5.40e-72 30 370 5 322
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7.02e-100 17 407 11 383
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
7.02e-100 17 407 11 383
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
7.02e-98 34 374 29 346
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
3.02e-92 30 407 25 382
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
3.02e-92 30 407 25 382
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000406 0.999581 CS pos: 26-27. Pr: 0.9700

TMHMM  Annotations      download full data without filtering help

Start End
5 27