logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: EPrPIT00000023643-p1

You are here: Home > Sequence: EPrPIT00000023643-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium irregulare
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium irregulare
CAZyme ID EPrPIT00000023643-p1
CAZy Family GT2
CAZyme Description Carbohydrate-binding family 9
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
418 PirrDAOMBR486_SC1340|CGC1 47621.68 6.1316
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GirregulareDAOMBR486 13869 1223557 65 13804
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in EPrPIT00000023643-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
CBM9 83 309 7.2e-30 0.989010989010989

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
187678 CBM9_like_3 6.40e-58 83 307 1 200
DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily may co-occur with various other domains.
187676 CBM9_like_2 1.11e-17 77 267 7 170
DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.79e-71 75 356 11 280
9.75e-70 81 356 27 298
1.88e-69 81 350 27 291
1.05e-68 81 350 27 291
1.05e-68 81 350 27 291

PDB Hits      help

EPrPIT00000023643-p1 has no PDB hit.

Swiss-Prot Hits      help

EPrPIT00000023643-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000288 0.999653 CS pos: 36-37. Pr: 0.9661

TMHMM  Annotations      help

There is no transmembrane helices in EPrPIT00000023643-p1.