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CAZyme Information: EPrPIT00000017877-p1

You are here: Home > Sequence: EPrPIT00000017877-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Globisporangium irregulare
Lineage Oomycota; NA; ; Pythiaceae; Globisporangium; Globisporangium irregulare
CAZyme ID EPrPIT00000017877-p1
CAZy Family GH131
CAZyme Description Polysaccharide lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
520 53735.63 6.1465
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_GirregulareDAOMBR486 13869 1223557 65 13804
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 298 492 4.1e-48 0.9896907216494846

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 2.44e-48 294 492 4 195
Pectate lyase.
236766 rne 6.30e-04 127 285 871 1026
ribonuclease E; Reviewed
273167 rad23 7.29e-04 126 189 81 141
UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
237015 PRK11901 0.003 106 186 171 248
hypothetical protein; Reviewed
237864 PRK14950 0.006 114 191 359 440
DNA polymerase III subunits gamma and tau; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.41e-57 291 520 58 283
4.80e-51 287 517 19 252
3.96e-48 289 516 31 259
8.26e-46 289 518 31 261
2.44e-37 292 502 20 234

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.48e-08 309 419 11 119
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
1.37e-06 343 516 36 224
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B90_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
2.88e-06 343 516 154 342
Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B4N_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_A Chain A, Endo-pectate lyase [Dickeya chrysanthemi],3B8Y_B Chain B, Endo-pectate lyase [Dickeya chrysanthemi]
5.14e-06 349 497 163 311
Chain A, Pectate lyase [Pectobacterium carotovorum],4U49_B Chain B, Pectate lyase [Pectobacterium carotovorum],4U4B_A Chain A, Pectate lyase [Pectobacterium carotovorum]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.10e-37 295 512 28 241
Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyG PE=3 SV=1
1.68e-36 295 512 43 259
Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyD PE=3 SV=1
6.28e-35 295 512 35 248
Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyD PE=3 SV=1
1.04e-34 295 492 41 232
Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyH PE=1 SV=1
6.71e-34 295 494 39 236
Probable pectate lyase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyG PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000283 0.999691 CS pos: 16-17. Pr: 0.9782

TMHMM  Annotations      help

There is no transmembrane helices in EPrPIT00000017877-p1.