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CAZyme Information: EPrPAT00000025259-p1

You are here: Home > Sequence: EPrPAT00000025259-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pythium aphanidermatum
Lineage Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum
CAZyme ID EPrPAT00000025259-p1
CAZy Family PL1
CAZyme Description Pectin lyase.
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
398 42023.91 9.9402
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PaphanidermatumDAOMBR444 12363 1223555 58 12305
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 117 313 1.6e-81 0.9893048128342246

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 1.12e-37 117 315 3 189
Amb_all domain.
226384 PelB 1.12e-14 104 319 64 280
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 6.28e-10 127 312 29 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
3.01e-139 20 394 53 430
4.76e-138 27 394 26 396
8.35e-138 19 394 16 394
7.75e-137 27 394 26 396
7.75e-137 27 394 26 396

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.35e-77 27 359 6 324
Pectin Lyase B [Aspergillus niger]
1.16e-74 27 355 6 319
Pectin Lyase A [Aspergillus niger]
7.96e-72 27 355 6 319
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.42e-97 30 394 29 380
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1
3.42e-97 30 394 29 380
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
3.16e-96 30 394 29 378
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
2.17e-89 30 394 30 381
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
2.17e-89 30 394 30 381
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000445 0.999550 CS pos: 25-26. Pr: 0.9756

TMHMM  Annotations      download full data without filtering help

Start End
7 29