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CAZyme Information: EPrPAT00000024497-p1

You are here: Home > Sequence: EPrPAT00000024497-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pythium aphanidermatum
Lineage Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum
CAZyme ID EPrPAT00000024497-p1
CAZy Family GT71
CAZyme Description Carbohydrate-binding protein.
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1432 155364.19 8.1187
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PaphanidermatumDAOMBR444 12363 1223555 58 12305
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 1.1.99.18:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 19 552 3.6e-104 0.9708029197080292

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
223562 Uup 2.75e-55 1024 1416 18 309
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].
215558 PLN03073 2.72e-44 996 1403 164 482
ABC transporter F family; Provisional
225186 BetA 2.93e-34 26 557 7 535
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
213188 ABCF_EF-3 5.26e-30 1249 1329 68 142
ATP-binding cassette domain of elongation factor 3, subfamily F. Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
223562 Uup 5.31e-26 1019 1350 332 529
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.37e-241 25 886 22 950
2.93e-218 25 889 22 885
3.91e-202 21 641 23 638
4.01e-160 25 550 22 544
2.68e-148 1 537 1 526

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.78e-56 27 551 3 530
Chain A, Cellobiose dehydrogenase [Phanerodontia chrysosporium],1NAA_B Chain B, Cellobiose dehydrogenase [Phanerodontia chrysosporium]
3.09e-56 27 551 8 535
Chain A, cellobiose dehydrogenase [Phanerodontia chrysosporium],1KDG_B Chain B, cellobiose dehydrogenase [Phanerodontia chrysosporium]
1.35e-33 26 571 7 558
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides],4QI5_A Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
6.01e-33 26 571 229 780
Chain A, Cellobiose dehydrogenase [Thermothelomyces myriococcoides]
5.54e-32 26 571 229 776
Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A],4QI7_B Cellobiose dehydrogenase from Neurospora crassa, NcCDH [Neurospora crassa OR74A]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.80e-54 27 551 235 762
Cellobiose dehydrogenase OS=Phanerodontia chrysosporium OX=2822231 GN=CDH-1 PE=1 SV=1
1.36e-30 995 1384 161 464
ABC transporter F family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCF3 PE=1 SV=1
1.14e-29 1002 1353 196 462
Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GCN20 PE=1 SV=1
5.40e-29 999 1353 157 413
ABC transporter F family member 4 OS=Arabidopsis thaliana OX=3702 GN=ABCF4 PE=2 SV=1
3.51e-27 1000 1353 261 507
ATP-binding cassette sub-family F member 1 OS=Sus scrofa OX=9823 GN=ABCF1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001070 0.998891 CS pos: 23-24. Pr: 0.7198

TMHMM  Annotations      help

There is no transmembrane helices in EPrPAT00000024497-p1.