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CAZyme Information: EPrPAT00000019428-p1

You are here: Home > Sequence: EPrPAT00000019428-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pythium aphanidermatum
Lineage Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum
CAZyme ID EPrPAT00000019428-p1
CAZy Family GH5
CAZyme Description Pectin lyase.
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
393 41895.79 10.0158
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PaphanidermatumDAOMBR444 12363 1223555 58 12305
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.10:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 116 308 9.5e-83 0.983957219251337

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
214765 Amb_all 3.48e-39 115 310 1 189
Amb_all domain.
226384 PelB 1.45e-16 31 336 47 306
Pectate lyase [Carbohydrate transport and metabolism].
366158 Pec_lyase_C 3.97e-09 125 307 29 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.23e-151 13 389 13 394
2.81e-137 13 339 13 344
4.68e-137 24 389 60 430
6.46e-137 24 392 26 399
1.05e-135 24 392 26 399

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.28e-78 19 389 1 357
Pectin Lyase A [Aspergillus niger]
1.60e-76 24 389 6 358
Pectin Lyase B [Aspergillus niger]
9.94e-75 19 389 1 357
Pectin Lyase A [Aspergillus niger],1IDJ_B Pectin Lyase A [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.33e-96 27 389 29 378
Probable pectin lyase F-2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=pelF-2 PE=3 SV=1
4.16e-91 27 389 30 381
Probable pectin lyase F OS=Aspergillus niger OX=5061 GN=pelF PE=3 SV=1
4.16e-91 27 389 30 381
Probable pectin lyase F OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pelF PE=3 SV=1
1.65e-90 27 389 29 380
Probable pectin lyase F OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pelF PE=3 SV=2
1.65e-90 27 389 29 380
Probable pectin lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pelF PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000312 0.999677 CS pos: 22-23. Pr: 0.9839

TMHMM  Annotations      download full data without filtering help

Start End
7 29