logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: EPrPAT00000018226-p1

You are here: Home > Sequence: EPrPAT00000018226-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pythium aphanidermatum
Lineage Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum
CAZyme ID EPrPAT00000018226-p1
CAZy Family GH3
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
226 PaphDAOMBR444_SC0187|CGC1 25456.65 7.9548
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PaphanidermatumDAOMBR444 12363 1223555 58 12305
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in EPrPAT00000018226-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA17 12 204 4.8e-67 0.7428571428571429

CDD Domains      help

EPrPAT00000018226-p1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
9.60e-65 8 205 6 201
1.36e-64 8 199 6 195
1.36e-64 8 199 6 195
7.74e-64 8 205 6 201
8.83e-63 8 199 6 195

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2.43e-24 24 194 1 170
Chain A, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4],6Z5Y_B Chain B, Lytic Polysaccharide Monooxygenase [Phytophthora infestans T30-4]

Swiss-Prot Hits      help

EPrPAT00000018226-p1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000207 0.999764 CS pos: 23-24. Pr: 0.9748

TMHMM  Annotations      help

There is no transmembrane helices in EPrPAT00000018226-p1.