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CAZyme Information: EPrPAT00000017326-p1

You are here: Home > Sequence: EPrPAT00000017326-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pythium aphanidermatum
Lineage Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum
CAZyme ID EPrPAT00000017326-p1
CAZy Family GH16
CAZyme Description Pectage lyase.
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
128 PaphDAOMBR444_SC0139|CGC1 13418.35 4.6676
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_PaphanidermatumDAOMBR444 12363 1223555 58 12305
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.2:4

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL3 34 126 5.6e-39 0.4690721649484536

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
397360 Pectate_lyase 1.07e-51 27 127 1 99
Pectate lyase.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
1.34e-49 8 127 12 133
5.38e-49 22 127 28 133
5.32e-48 10 127 6 123
1.04e-45 25 126 8 109
1.62e-45 10 127 9 126

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.12e-16 43 124 9 89
Crystal Structure Of Pectate Lyase From Bacillus Sp. Strain Ksm-P15. [Bacillus sp. KSM-P15]
2.39e-13 45 124 16 92
The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725],4EW9_B The liganded structure of C. bescii family 3 pectate lyase [Caldicellulosiruptor bescii DSM 6725]
2.43e-13 45 124 17 93
The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii],3T9G_B The crystal structure of family 3 pectate lyase from Caldicellulosiruptor bescii [Caldicellulosiruptor bescii]
2.75e-13 45 124 25 101
C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZA_B C. bescii Family 3 pectate lyase double mutant K108A/Q111A in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]
2.75e-13 45 124 25 101
C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725],4YZQ_B C. bescii Family 3 pectate lyase double mutant K108A/Q111N in complex with trigalacturonic acid [Caldicellulosiruptor bescii DSM 6725]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.28e-31 15 127 10 117
Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyD PE=3 SV=1
1.28e-31 15 127 10 117
Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyD PE=3 SV=1
4.73e-31 31 125 37 127
Pectate lyase E OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyE PE=1 SV=1
3.96e-30 31 127 39 133
Probable pectate lyase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyG PE=3 SV=1
7.76e-30 31 127 22 116
Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000213 0.999761 CS pos: 22-23. Pr: 0.9789

TMHMM  Annotations      help

There is no transmembrane helices in EPrPAT00000017326-p1.