You are browsing environment: FUNGIDB
CAZyme Information: EPrPAT00000013784-p1
You are here: Home > Sequence: EPrPAT00000013784-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pythium aphanidermatum | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Oomycota; NA; ; Pythiaceae; Pythium; Pythium aphanidermatum | |||||||||||
| CAZyme ID | EPrPAT00000013784-p1 | |||||||||||
| CAZy Family | AA17 | |||||||||||
| CAZyme Description | Choline dehydrogenase. | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 78 | 606 | 1.5e-99 | 0.9630281690140845 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 225186 | BetA | 5.19e-76 | 79 | 604 | 7 | 514 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| 235000 | PRK02106 | 6.47e-68 | 78 | 602 | 4 | 510 | choline dehydrogenase; Validated |
| 366272 | GMC_oxred_N | 7.80e-26 | 162 | 381 | 24 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
| 398739 | GMC_oxred_C | 5.25e-24 | 475 | 604 | 1 | 128 | GMC oxidoreductase. This domain found associated with pfam00732. |
| 215420 | PLN02785 | 2.48e-11 | 80 | 617 | 56 | 574 | Protein HOTHEAD |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.54e-245 | 31 | 631 | 35 | 654 | |
| 2.05e-54 | 63 | 607 | 31 | 584 | |
| 3.01e-48 | 83 | 602 | 28 | 534 | |
| 5.80e-48 | 80 | 604 | 15 | 510 | |
| 5.80e-48 | 80 | 604 | 15 | 510 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.55e-51 | 72 | 638 | 6 | 545 | Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis] |
|
| 4.81e-51 | 72 | 638 | 6 | 545 | Chain A, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis] |
|
| 6.60e-51 | 72 | 638 | 6 | 545 | Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis] |
|
| 5.01e-49 | 73 | 607 | 1 | 544 | Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
|
| 6.86e-49 | 73 | 607 | 1 | 544 | Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.17e-54 | 76 | 601 | 3 | 511 | 4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1 |
|
| 4.47e-53 | 81 | 601 | 4 | 503 | Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) OX=491916 GN=betA PE=3 SV=1 |
|
| 2.21e-52 | 81 | 601 | 4 | 503 | Oxygen-dependent choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=betA PE=3 SV=1 |
|
| 1.01e-50 | 81 | 602 | 4 | 504 | Oxygen-dependent choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) OX=311403 GN=betA PE=3 SV=1 |
|
| 1.90e-50 | 81 | 601 | 4 | 503 | Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.999969 | 0.000046 |
