logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: CXQ85_003045-t46_1-p1

You are here: Home > Sequence: CXQ85_003045-t46_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species [Candida] haemuloni
Lineage Ascomycota; Saccharomycetes; ; Debaryomycetaceae; Candida; [Candida] haemuloni
CAZyme ID CXQ85_003045-t46_1-p1
CAZy Family GT2
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
561 63498.40 8.7608
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_ChaemulonisB11899 5409 N/A 160 5249
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 2.4.1.-:14

CAZyme Signature Domains help

Family Start End Evalue family coverage
GT50 142 355 5.7e-68 0.7557251908396947

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
206775 RNase_PH_RRP41 1.04e-105 354 553 26 226
RRP41 subunit of eukaryotic exosome. The RRP41 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts.
178434 PLN02841 1.93e-66 7 353 6 350
GPI mannosyltransferase
252941 Mannosyl_trans 3.56e-58 142 353 1 194
Mannosyltransferase (PIG-M). PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilize nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates.
223761 Rph 1.03e-52 353 549 31 230
Ribonuclease PH [Translation, ribosomal structure and biogenesis].
235187 PRK03983 5.97e-36 354 543 38 227
exosome complex exonuclease Rrp41; Provisional

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.39e-300 6 561 2 623
3.64e-268 4 560 1 637
3.49e-144 4 353 1 351
5.63e-143 4 353 1 351
2.26e-142 4 353 1 351

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.00e-75 354 555 37 239
Cryo-EM structure of yeast cytoplasmic exosome [Saccharomyces cerevisiae],6LQS_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJT_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7AJU_EC Chain EC, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C],7D4I_R1 Chain R1, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
1.07e-75 354 555 39 241
Crystal structure of an 11-subunit eukaryotic exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5C0W_B Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates [Saccharomyces cerevisiae S288C],5C0X_B Structure of a 12-subunit nuclear exosome complex bound to structured RNA [Saccharomyces cerevisiae S288C],6FSZ_BB Chain BB, Exosome complex component SKI6 [Saccharomyces cerevisiae S288C]
1.11e-75 354 555 40 242
Structure of a cytoplasmic 11-subunit RNA exosome complex including Ski7, bound to RNA [Saccharomyces cerevisiae S288C],5OKZ_B Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_L Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_V Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C],5OKZ_f Crystal Strucrure of the Mpp6 Exosome complex [Saccharomyces cerevisiae S288C]
1.14e-75 354 555 41 243
Structure of an Rrp6-RNA exosome complex bound to poly(A) RNA [Saccharomyces cerevisiae S288C],5K36_B Structure of an eleven component nuclear RNA exosome complex bound to RNA [Saccharomyces cerevisiae S288C],5VZJ_B STRUCTURE OF A TWELVE COMPONENT MPP6-NUCLEAR RNA EXOSOME COMPLEX BOUND TO RNA [Saccharomyces cerevisiae S288C]
1.99e-75 354 555 37 239
yeast rrp44 nuclease [Saccharomyces cerevisiae]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.53e-106 4 354 1 339
GPI mannosyltransferase 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GPI14 PE=3 SV=2
3.17e-101 16 354 11 328
GPI mannosyltransferase 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GPI14 PE=3 SV=1
5.17e-75 354 555 37 239
Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SKI6 PE=1 SV=1
8.19e-75 6 353 3 328
GPI mannosyltransferase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GPI14 PE=3 SV=1
5.71e-72 12 353 29 415
GPI mannosyltransferase 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=gim-1 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000027 0.000005

TMHMM  Annotations      download full data without filtering help

Start End
12 29
65 84
126 148
168 190
221 243
301 318
325 347