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CAZyme Information: CLCR_02901-t43_1-p1

You are here: Home > Sequence: CLCR_02901-t43_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cladophialophora carrionii
Lineage Ascomycota; Eurotiomycetes; ; Herpotrichiellaceae; Cladophialophora; Cladophialophora carrionii
CAZyme ID CLCR_02901-t43_1-p1
CAZy Family GH132
CAZyme Description putative galacturan 1,4-alpha-galacturonidase A
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
495 LGRB01000003|CGC7 53501.71 5.5916
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CcarrioniiKSF 11240 N/A 59 11181
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in CLCR_02901-t43_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 113 483 7.6e-57 0.9692307692307692

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
177865 PLN02218 3.00e-24 100 481 77 418
polygalacturonase ADPG
395231 Glyco_hydro_28 5.07e-20 193 478 61 321
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
178580 PLN03003 6.68e-18 185 487 117 381
Probable polygalacturonase At3g15720
215426 PLN02793 3.76e-16 185 465 147 394
Probable polygalacturonase
215120 PLN02188 5.20e-16 102 482 48 391
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.88e-189 56 488 32 457
2.06e-187 63 488 39 457
3.75e-185 56 488 32 456
1.85e-179 136 482 1 346
2.64e-111 90 491 28 438

PDB Hits      help

CLCR_02901-t43_1-p1 has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4.69e-112 90 491 28 438
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
4.69e-112 90 491 28 438
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
6.49e-109 91 491 28 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
6.49e-109 91 491 28 437
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
6.79e-59 94 465 30 395
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.001539 0.998408 CS pos: 35-36. Pr: 0.9607

TMHMM  Annotations      help

There is no transmembrane helices in CLCR_02901-t43_1-p1.