logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: CLCR_02713-t43_1-p1

You are here: Home > Sequence: CLCR_02713-t43_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cladophialophora carrionii
Lineage Ascomycota; Eurotiomycetes; ; Herpotrichiellaceae; Cladophialophora; Cladophialophora carrionii
CAZyme ID CLCR_02713-t43_1-p1
CAZy Family GH13
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1049 LGRB01000003|CGC7 116977.25 6.3240
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CcarrioniiKSF 11240 N/A 59 11181
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in CLCR_02713-t43_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 11 574 3.7e-144 0.9929577464788732

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
234866 PRK00927 5.62e-123 635 984 3 330
tryptophanyl-tRNA synthetase; Reviewed
223258 TrpS 9.80e-95 635 966 7 313
Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
173903 TrpRS_core 1.19e-92 635 935 1 279
catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
225186 BetA 1.18e-87 12 576 8 536
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
215478 PLN02886 2.49e-87 598 983 18 383
aminoacyl-tRNA ligase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.23e-286 8 582 5 579
3.16e-286 8 582 5 579
3.16e-286 8 582 5 579
3.06e-282 9 577 8 576
3.75e-282 8 582 5 588

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5.47e-65 8 574 3 570
Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40],3Q9T_B Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40],3Q9T_C Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40]
7.47e-65 8 574 3 570
Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU3_B Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU3_C Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40]
1.02e-64 8 574 3 570
Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_B Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_C Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40]
3.45e-63 634 983 18 341
Human mitochondrial tryptophanyl-tRNA synthetase bound by indolmycin and Mn*ATP. [Homo sapiens],5EKD_B Human mitochondrial tryptophanyl-tRNA synthetase bound by indolmycin and Mn*ATP. [Homo sapiens]
3.96e-63 637 984 5 324
2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus],1D2R_B 2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus],1D2R_C 2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus],1D2R_D 2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus],1D2R_E 2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus],1D2R_F 2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. [Geobacillus stearothermophilus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3.57e-81 635 985 15 359
Tryptophan--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=msw1 PE=3 SV=1
7.48e-77 637 983 38 378
Tryptophan--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MSW1 PE=1 SV=2
8.42e-66 638 983 7 327
Tryptophan--tRNA ligase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=trpS PE=3 SV=1
1.12e-65 10 575 3 529
L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1
2.18e-65 638 983 7 327
Tryptophan--tRNA ligase OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=trpS PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000051 0.000002

TMHMM  Annotations      help

There is no transmembrane helices in CLCR_02713-t43_1-p1.