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CAZyme Information: CLCR_00838-t43_1-p1

You are here: Home > Sequence: CLCR_00838-t43_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cladophialophora carrionii
Lineage Ascomycota; Eurotiomycetes; ; Herpotrichiellaceae; Cladophialophora; Cladophialophora carrionii
CAZyme ID CLCR_00838-t43_1-p1
CAZy Family AA3
CAZyme Description glycoside hydrolase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
537 60508.81 5.6052
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CcarrioniiKSF 11240 N/A 59 11181
Gene Location Start: 341053; End:342666  Strand: -

Full Sequence      Download help

MSIPVAINVF  GNKPVEPWRQ  IYRFYGTDEI  NYVYMKDGRK  LLEKLGSLGP  HQAWFRAHSQ60
FVTGEGVHAL  KWGSTNAYTE  DKDGNPVYDW  TIIDRVYDTY  LEKKLKPYVQ  FGFMPQALSV120
QPEPYQHKWT  PTAPYGEIFT  GWAYPPKDYA  KWGELIYQWT  KHCVERYGIS  ECESWYWETW180
NEPDIGYWQG  TPEEYNKLYD  YAVEGVRRAL  PSAKVGGPET  TGRGPEYLRG  FLQHCLDGEN240
PATQGKGAPL  DFVSFHAKGA  PQYQEETKSV  RMGIAHHLRE  IDTSFGVIAS  FPKFKPLPIV300
LGESDPEGAA  AAQGPQLAYR  NSTLYSSYTA  ASFARKHLLS  EKHGVNLEGV  VTWAFEFEDQ360
PYFAGFRVLA  SNDVDLPVLN  IFRMFARMEG  ERLASTSSQQ  VPLQDLLQNS  VREDADVGAI420
AARDGQTVSV  MVWHYHDDDL  KGPSAAVDLT  LEGVGWKENS  TLRHYRVDET  HSNSYTVWKS480
MGSPQQPTAE  QYAKLQAAGS  LAEYTGPTKL  EAQSGVPKLS  FDLPRQGVSL  LVFENVG537

Enzyme Prediction      help

No EC number prediction in CLCR_00838-t43_1-p1.

CAZyme Signature Domains help

Created with Snap26538010713416118721424126829532234937540242945648351045431GH39
Family Start End Evalue family coverage
GH39 68 488 1.7e-110 0.8955916473317865

CDD Domains      download full data without filtering help

Created with Snap26538010713416118721424126829532234937540242945648351036531Glyco_hydro_3986534XynB89256agarase_cat
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395983 Glyco_hydro_39 2.01e-60 36 531 9 485
Glycosyl hydrolases family 39.
226190 XynB 3.48e-16 86 534 35 425
Beta-xylosidase [Carbohydrate transport and metabolism].
411072 agarase_cat 0.002 89 256 15 185
alpha-beta barrel catalytic domain of agarase, such as GH86-like endo-acting agarases identified in non-marine organisms. Typically, agarases (E.C. 3.2.1.81) are found in ocean-dwelling bacteria since agarose is a principle component of red algae cell wall polysaccharides. Agarose is a linear polymer of alternating D-galactose and 3,6-anhydro-L-galactopyranose. Endo-acting agarases, such as glycoside hydrolase 16 (GH16) and GH86 hydrolyze internal beta-1,4 linkages. GH86-like endo-acting agarase of this protein family has been identified in the human intestinal bacterium Bacteroides uniformis. This acquired metabolic pathway, as demonstrated by the prevalence of agar-specific genetic cluster called polysaccharide utilization loci (PULs), varies considerably between human populations, being much more prevalent in a Japanese sample than in North America, European, or Chinese samples. Agarase activity was also identified in the non-marine bacterium Cellvibrio sp.

CAZyme Hits      help

Created with Snap2653801071341611872142412682953223493754024294564835102534QUE49967.1|GH392535BDI29153.1|GH395534QEL20922.1|GH392534BBO31185.1|GH392534AKC84030.1|GH39
Hit ID E-Value Query Start Query End Hit Start Hit End
QUE49967.1|GH39 4.71e-248 2 534 28 560
BDI29153.1|GH39 3.55e-242 2 535 25 558
QEL20922.1|GH39 4.68e-237 5 534 36 564
BBO31185.1|GH39 4.73e-235 2 534 29 563
AKC84030.1|GH39 5.06e-234 2 534 22 555

PDB Hits      download full data without filtering help

Created with Snap26538010713416118721424126829532234937540242945648351065362BS9_A65361W91_A65362BFG_A685301PX8_A675366YYH_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
2BS9_A 6.51e-40 6 536 3 483
Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_B Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_C Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_D Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_E Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_F Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_G Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus],2BS9_H Native crystal structure of a GH39 beta-xylosidase XynB1 from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
1W91_A 8.93e-40 6 536 3 483
crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_B crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_C crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_D crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_E crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_F crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_G crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct],1W91_H crystal structure of 1,4-BETA-D-XYLAN XYLOHYDROLASE solve using anomalous signal from Seleniomethionine [synthetic construct]
2BFG_A 4.34e-39 6 536 3 483
crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_B crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_C crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_D crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_E crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_F crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_G crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus],2BFG_H crystal structure of beta-xylosidase (fam GH39) in complex with dinitrophenyl-beta-xyloside and covalently bound xyloside [Geobacillus stearothermophilus]
1PX8_A 3.04e-36 68 530 54 476
Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1PX8_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_A Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_B Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_C Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum],1UHV_D Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase [Thermoanaerobacterium saccharolyticum]
6YYH_A 4.96e-33 67 536 76 505
Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYH_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum in ligand-free form [Dictyoglomus thermophilum H-6-12],6YYI_A Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12],6YYI_B Crystal structure of beta-D-xylosidase from Dictyoglomus thermophilum bound to beta-D-xylopyranose [Dictyoglomus thermophilum H-6-12]

Swiss-Prot Hits      download full data without filtering help

Created with Snap2653801071341611872142412682953223493754024294564835106536sp|Q9ZFM2|XYNB_GEOSE68530sp|O30360|XYNB_THESW68530sp|P36906|XYNB_THESA83501sp|P23552|XYNB_CALSA151496sp|P48441|IDUA_MOUSE
Hit ID E-Value Query Start Query End Hit Start Hit End Description
sp|Q9ZFM2|XYNB_GEOSE 1.20e-38 6 536 3 484
Beta-xylosidase OS=Geobacillus stearothermophilus OX=1422 GN=xynB PE=1 SV=1
sp|O30360|XYNB_THESW 1.14e-35 68 530 54 476
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485) OX=1094508 GN=xynB PE=3 SV=1
sp|P36906|XYNB_THESA 1.14e-35 68 530 54 476
Beta-xylosidase OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynB PE=1 SV=1
sp|P23552|XYNB_CALSA 6.60e-29 83 501 75 454
Beta-xylosidase OS=Caldicellulosiruptor saccharolyticus OX=44001 GN=xynB PE=3 SV=1
sp|P48441|IDUA_MOUSE 8.58e-22 151 496 141 495
Alpha-L-iduronidase OS=Mus musculus OX=10090 GN=Idua PE=1 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000065 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in CLCR_00838-t43_1-p1.