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CAZyme Information: CIMG_04413-t26_1-p1

You are here: Home > Sequence: CIMG_04413-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coccidioides immitis
Lineage Ascomycota; Eurotiomycetes; ; Onygenaceae; Coccidioides; Coccidioides immitis
CAZyme ID CIMG_04413-t26_1-p1
CAZy Family GH18
CAZyme Description choline oxidase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
544 60194.52 6.4325
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CimmitisRS 9905 246410 148 9757
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in CIMG_04413-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
AA3 14 538 1.1e-89 0.5129449838187702

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
225186 BetA 3.40e-109 16 536 7 538
Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only].
235000 PRK02106 1.66e-106 16 531 5 531
choline dehydrogenase; Validated
398739 GMC_oxred_C 1.33e-42 386 527 1 143
GMC oxidoreductase. This domain found associated with pfam00732.
215420 PLN02785 5.93e-35 2 524 41 569
Protein HOTHEAD
366272 GMC_oxred_N 2.23e-24 93 309 23 218
GMC oxidoreductase. This family of proteins bind FAD as a cofactor.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 5 544 92 631
0.0 5 544 3 542
0.0 5 544 3 542
0.0 5 544 3 542
0.0 5 544 3 542

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.92e-121 17 531 14 526
Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],2JBV_B Crystal structure of choline oxidase reveals insights into the catalytic mechanism [Arthrobacter globiformis],4MJW_A Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis],4MJW_B Crystal Structure of Choline Oxidase in Complex with the Reaction Product Glycine Betaine [Arthrobacter globiformis]
2.72e-121 17 531 14 526
Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_B Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_C Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_D Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_E Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_F Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_G Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis],3NNE_H Crystal structure of choline oxidase S101A mutant [Arthrobacter globiformis]
7.65e-121 17 531 14 526
Chain A, Choline oxidase [Arthrobacter globiformis],3LJP_B Chain B, Choline oxidase [Arthrobacter globiformis]
9.46e-54 17 542 84 649
Chain AAA, Fatty acid photodecarboxylase, chloroplastic [Chlorella variabilis]
1.45e-53 17 542 8 573
Chain AAA, Fatty acid Photodecarboxylase [Chlorella variabilis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.90e-121 17 531 14 526
Choline oxidase OS=Arthrobacter globiformis OX=1665 GN=codA PE=1 SV=1
3.63e-73 15 532 5 534
4-pyridoxate dehydrogenase OS=Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099) OX=266835 GN=padh1 PE=1 SV=1
2.13e-68 16 531 7 536
Oxygen-dependent choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=betA PE=3 SV=1
2.13e-68 16 531 7 536
Oxygen-dependent choline dehydrogenase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=betA PE=3 SV=1
2.91e-68 15 531 5 534
Oxygen-dependent choline dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=betA PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI CS Position
1.000038 0.000006

TMHMM  Annotations      help

There is no transmembrane helices in CIMG_04413-t26_1-p1.