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CAZyme Information: CGB_C4020C-t26_1-p1

You are here: Home > Sequence: CGB_C4020C-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Cryptococcus gattii VGI
Lineage Arthropoda; Insecta; ; Eriococcidae; Cryptococcus; Cryptococcus gattii VGI
CAZyme ID CGB_C4020C-t26_1-p1
CAZy Family GH114
CAZyme Description polygalacturonase, putative
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
474 53330.81 5.5528
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_CgattiiWM276 6580 367775 15 6565
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in CGB_C4020C-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 131 447 7.1e-62 0.7938461538461539

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 1.47e-22 160 448 61 315
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 3.64e-20 70 447 77 417
polygalacturonase ADPG
215426 PLN02793 3.31e-15 160 433 151 396
Probable polygalacturonase
215540 PLN03010 3.27e-14 70 466 56 409
polygalacturonase
178580 PLN03003 5.60e-14 153 421 116 347
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
0.0 1 474 1 474
0.0 1 474 1 474
0.0 1 474 1 478
0.0 1 474 1 479
0.0 1 474 1 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.46e-19 56 403 11 330
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.30e-111 64 431 31 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
1.30e-111 64 431 31 412
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
2.43e-106 64 452 32 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
4.85e-106 64 452 32 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
1.91e-63 57 457 27 414
Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000295 0.999669 CS pos: 18-19. Pr: 0.9666

TMHMM  Annotations      help

There is no transmembrane helices in CGB_C4020C-t26_1-p1.