logo
sublogo
You are browsing environment: FUNGIDB
help

CAZyme Information: CDH53800.1

You are here: Home > Sequence: CDH53800.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lichtheimia corymbifera
Lineage Mucoromycota; Mucoromycetes; ; Lichtheimiaceae; Lichtheimia; Lichtheimia corymbifera
CAZyme ID CDH53800.1
CAZy Family GH35
CAZyme Description alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
287 CBTN010000019|CGC1 32275.37 9.8144
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_LcorymbiferaJMRCFSU9682 12379 1263082 97 12282
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.26:2

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL14 77 283 1.5e-62 0.9789473684210527

CDD Domains      help

CDH53800.1 has no CDD domain.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.73e-204 1 287 1 289
8.44e-118 28 283 30 286
3.41e-59 66 281 69 283
1.35e-58 66 281 48 259
3.92e-58 66 281 49 260

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.07e-46 77 283 58 270
Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai],5GMT_B Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai]
4.79e-10 86 286 51 243
Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_A Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_B Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3IM0_A Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0) [Paramecium bursaria Chlorella virus CVK2]

Swiss-Prot Hits      help

CDH53800.1 has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000311 0.999660 CS pos: 23-24. Pr: 0.9786

TMHMM  Annotations      download full data without filtering help

Start End
7 29