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CAZyme Information: CDH53311.1

You are here: Home > Sequence: CDH53311.1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lichtheimia corymbifera
Lineage Mucoromycota; Mucoromycetes; ; Lichtheimiaceae; Lichtheimia; Lichtheimia corymbifera
CAZyme ID CDH53311.1
CAZy Family GH3
CAZyme Description extracellular exo-polygalacturonase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
416 46081.52 4.7431
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_LcorymbiferaJMRCFSU9682 12379 1263082 97 12282
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.-:3

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 47 401 8.7e-71 0.96

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 5.26e-46 74 402 24 317
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 4.15e-44 119 386 147 394
Probable polygalacturonase
178580 PLN03003 1.15e-41 105 391 95 362
Probable polygalacturonase At3g15720
215540 PLN03010 5.71e-37 108 400 131 389
polygalacturonase
177865 PLN02218 6.70e-36 36 398 82 422
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
8.31e-283 1 416 1 402
4.11e-91 26 409 22 379
2.84e-83 28 411 30 383
2.84e-83 28 411 30 383
3.09e-79 25 400 48 424

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.30e-37 13 397 1 371
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
6.62e-26 112 400 73 338
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
6.62e-26 112 400 73 338
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
1.51e-25 112 400 65 330
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.31e-22 111 402 65 345
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.58e-91 7 409 11 383
Exopolygalacturonase rpg16 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) OX=246409 GN=rpg16 PE=1 SV=1
9.54e-85 12 409 11 383
Exopolygalacturonase rpg15 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) OX=246409 GN=rpg15 PE=1 SV=1
2.06e-74 27 409 30 361
Exopolygalacturonase rpg13 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) OX=246409 GN=rpg13 PE=1 SV=1
2.68e-74 14 406 45 430
Exopolygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGX1 PE=3 SV=1
4.18e-73 7 409 4 371
Exopolygalacturonase rpg14 OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) OX=246409 GN=rpg14 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000229 0.999742 CS pos: 19-20. Pr: 0.9836

TMHMM  Annotations      help

There is no transmembrane helices in CDH53311.1.