CAZyme Information: CDH48862.1

Basic Information

• Species: Lichtheimia corymbifera
• Lineage: Mucoromycota; Mucoromycetes; ; Lichtheimiaceae; Lichtheimia; Lichtheimia corymbifera
• CAZyme ID: CDH48862.1
• CAZy Family: CBM13
• CAZyme Description: protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
815		94732.92	8.1040

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_LcorymbiferaJMRCFSU9682	12379	1263082	97	12282

• Gene Location: location=CBTN010000002:322565-325125(-)

Full Sequence      

MPPLLKHDTDSRSSSSHSPPSPINATKQRRLNSLHLADIAVDLGFPPSSRRDKKDQKPRR
FYTPHHSYFFYYQQRWKWWLLLLAIVFFTTFAVFSLTPLQEEPQRNQLLLYRIIGNDLPP
RHKEGQTLSNLHFILEHEPSFPNTRKMFLLNRISDPASERAIIDLLERYHAEYMRIPFDE
EEYKQIDFRLEDFSEPDFLHSDDYRRFSKVAKLRTLDYTYHDKNLYAMNNNGGRNRAIQH
GKSIHNARWIMPFDGNCYLTPNAFNEIKTQLDRFGSDTKYFIVPMIRLLNNSVLLDNMDQ
RPKAHEEPQIIFRYDATEEYNLNMRYGRRSKLELLFRLGALENRRLNRPTVAWEPKERAY
SQDKGNFRTIGWVFRLFSGNPQQEESKKEASSIRAFNRLLAIQSSLDGLDESIARQTFRH
DRLFLYNETSMASIRHAYWSKGDDSIAATMDILERRAENMLQAATDRLTTPETSTTEAPS
ITQAAYADQPELGELAQNITTLTLAHYFLGNEKYGRWAANLVRVYFLNDYVLHEDDVDEY
SSARMIPDSTHLLDFLSDQGYSFPSLSRSSRTVPNAPSPKQQRLIFNASHLTRTDTTAVL
DAMRLLRRSQMLTHREYLDLQGLLAQVLEYLITIPTGIHLAQMTDHRGVLYDLQVTALAA
FTDDVRLLLRVANRCRMRIGKQFMADGSQPYQIASAQRFAQQQQQQDKDEDSLIAQYETL
NLHYWTMLARGIQNTGIAKDIWHYTAKNEGRISHAVATHLKKHSASASLAPLAHMAHAAF
QYSGPEKSRADWHWMMNYHASSQVHDDDSVIYLLT

Enzyme Prediction     

No EC number prediction in CDH48862.1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL38	597	761	1.9e-16	0.5268817204301075

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
398861	Alginate_lyase	3.16e-16	484	760	46	265	Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QSB05068.1|PL38	1.10e-81	101	693	393	979
QBY01811.1|GT0|PL38	3.16e-78	106	748	250	868
AKJ94791.1|PL38	2.48e-74	106	744	70	679
QPP47941.1|PL38	8.03e-74	106	742	53	657
AHM03579.1|GT2|PL38	5.19e-72	102	729	237	842

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3NFV_A	1.65e-08	488	694	97	270	Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.95 A resolution [Bacteroides ovatus ATCC 8483],3NNB_A Crystal structure of an alginate lyase (BACOVA_01668) from Bacteroides ovatus at 1.60 A resolution [Bacteroides ovatus ATCC 8483]

Swiss-Prot Hits     

CDH48862.1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
0.999913	0.000126

TMHMM  Annotations     

Start	End
78	100