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CAZyme Information: CC1G_05428-t26_1-p1

You are here: Home > Sequence: CC1G_05428-t26_1-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Coprinopsis cinerea
Lineage Basidiomycota; Agaricomycetes; ; Psathyrellaceae; Coprinopsis; Coprinopsis cinerea
CAZyme ID CC1G_05428-t26_1-p1
CAZy Family GH10
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
837 92028.62 4.5840
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_Ccinereaokay7-130 13657 240176 301 13356
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in CC1G_05428-t26_1-p1.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 78 423 1.7e-62 0.9015384615384615

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 9.69e-29 87 420 14 314
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426 PLN02793 3.14e-26 120 398 136 386
Probable polygalacturonase
177865 PLN02218 2.46e-22 120 412 149 414
polygalacturonase ADPG
215120 PLN02188 7.45e-22 136 425 130 391
polygalacturonase/glycoside hydrolase family protein
178580 PLN03003 7.42e-15 120 430 106 381
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
5.07e-80 37 427 63 456
1.03e-76 37 427 63 456
1.39e-76 37 427 63 455
1.97e-74 8 427 3 434
1.97e-74 8 427 3 434

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.92e-24 41 427 21 380
Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]
5.55e-22 83 421 41 346
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
8.12e-09 123 420 73 337
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
8.12e-09 123 420 73 337
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
4.30e-08 123 420 65 329
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
9.40e-75 34 428 29 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1
1.31e-74 17 428 9 435
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2
2.46e-72 33 427 27 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1
2.46e-72 33 427 27 433
Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2
8.82e-60 1 415 1 403
Putative galacturan 1,4-alpha-galacturonidase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxC PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000182 0.999806 CS pos: 22-23. Pr: 0.9802

TMHMM  Annotations      help

There is no transmembrane helices in CC1G_05428-t26_1-p1.