CAZyme Information: CC1G_05356-t26_1-p1

Basic Information

• Species: Coprinopsis cinerea
• Lineage: Basidiomycota; Agaricomycetes; ; Psathyrellaceae; Coprinopsis; Coprinopsis cinerea
• CAZyme ID: CC1G_05356-t26_1-p1
• CAZy Family: CE5
• CAZyme Description: alginate lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
352		38536.02	6.4983

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_Ccinereaokay7-130	13657	240176	301	13356

• Gene Location: location=AACS02000008:106252-107453(-)

Full Sequence      

MSLGPSVLTTRSLPTYDSLFPLSSGLSSWTTLPGHPDSLPLANSTLNPIKAMKALPLRYV
TGPDGKDAIHVHFPNGSYTLNSDPQGGISFYSHGPKDHDLTIAKEATLGYAVYFPEGFEF
VKGGKLPGFFGGNSDDESYSCSGGRKDIACFSTRLMWRTNGAGEIYAYFPPYDVPGFESN
RALCEPAENRCDATYGISIGRGNFKFERGRWTTVAQRVRLNDPGQANGEVELFVDGKSKI
RAEGIIIREGEEGRIRGIQVQSFFGGSTVDWASPKDQDIYFADFSVAVTQGFDETDNQKW
RRDLETREVSNSSSSSVVHLHRRSSSASSAHRGVGWAWSMLSLLTIVSMLAI

Enzyme Prediction     

No EC number prediction in CC1G_05356-t26_1-p1.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL14	65	285	5.7e-76	0.9907834101382489

CDD Domains     

CC1G_05356-t26_1-p1 has no CDD domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QRV93402.1|PL14_4	5.27e-68	18	290	126	395
QRW07548.1|PL14_4	5.67e-67	21	290	130	394
AUB27086.1|PL14_4	7.35e-67	19	288	249	497
AFR97104.1|PL14_4	7.35e-67	19	288	249	497
QRV78622.1|PL14_4	2.30e-66	18	290	126	395

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5GMT_A	2.22e-38	68	286	58	270	Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai],5GMT_B Crystal structure of the marine PL-14 alginate lyase from Aplysia kurodai [Aplysia kurodai]
3A0N_A	4.29e-10	60	286	31	240	Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_A Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3GNE_B Crystal structure of alginate lyase vAL-1 from Chlorella virus [Paramecium bursaria Chlorella virus CVK2],3IM0_A Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0) [Paramecium bursaria Chlorella virus CVK2]

Swiss-Prot Hits     

CC1G_05356-t26_1-p1 has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	CS Position
1.000047	0.000002

TMHMM  Annotations     

There is no transmembrane helices in CC1G_05356-t26_1-p1.