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CAZyme Information: Bcin15g05030.1:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin15g05030.1:RNA-p1 | |||||||||||
| CAZy Family | GT4 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.67:2 |
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CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 47 | 393 | 9.8e-42 | 0.9384615384615385 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 4.19e-28 | 61 | 382 | 16 | 304 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215426 | PLN02793 | 8.32e-14 | 195 | 393 | 226 | 406 | Probable polygalacturonase |
| 215540 | PLN03010 | 1.65e-12 | 195 | 398 | 206 | 391 | polygalacturonase |
| 227721 | Pgu1 | 8.60e-12 | 152 | 340 | 246 | 445 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| 177865 | PLN02218 | 3.82e-11 | 150 | 336 | 198 | 384 | polygalacturonase ADPG |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 3.25e-312 | 1 | 414 | 1 | 414 | |
| 2.67e-311 | 1 | 414 | 1 | 414 | |
| 1.10e-241 | 1 | 413 | 1 | 412 | |
| 2.07e-187 | 1 | 384 | 1 | 388 | |
| 6.72e-155 | 20 | 412 | 30 | 419 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.03e-19 | 34 | 317 | 7 | 276 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 6.60e-19 | 34 | 317 | 15 | 284 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 6.60e-19 | 34 | 317 | 15 | 284 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 3.33e-18 | 15 | 322 | 12 | 329 | Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
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| 2.29e-17 | 129 | 382 | 84 | 319 | Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.32e-70 | 22 | 410 | 34 | 436 | Probable exopolygalacturonase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgxC PE=3 SV=1 |
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| 1.56e-69 | 27 | 413 | 40 | 436 | Probable exopolygalacturonase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgxC PE=3 SV=1 |
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| 1.56e-69 | 27 | 413 | 40 | 436 | Probable exopolygalacturonase C OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgxC PE=3 SV=1 |
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| 9.30e-69 | 17 | 410 | 27 | 434 | Probable exopolygalacturonase C OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgxC PE=3 SV=2 |
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| 9.30e-69 | 17 | 410 | 27 | 434 | Exopolygalacturonase C OS=Aspergillus niger OX=5061 GN=pgxC PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000236 | 0.999756 | CS pos: 19-20. Pr: 0.9694 |