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CAZyme Information: Bcin14g01630.1:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin14g01630.1:RNA-p1 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 4.2.2.2:30 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL1 | 87 | 267 | 1.7e-89 | 0.994475138121547 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 214765 | Amb_all | 3.01e-58 | 87 | 271 | 1 | 190 | Amb_all domain. |
| 226384 | PelB | 9.14e-50 | 9 | 332 | 2 | 342 | Pectate lyase [Carbohydrate transport and metabolism]. |
| 366158 | Pec_lyase_C | 1.28e-35 | 97 | 267 | 29 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 4.47e-229 | 1 | 335 | 1 | 335 | |
| 4.47e-229 | 1 | 335 | 1 | 335 | |
| 1.90e-191 | 1 | 335 | 1 | 335 | |
| 3.26e-123 | 6 | 333 | 3 | 331 | |
| 5.34e-122 | 12 | 333 | 10 | 331 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6.87e-35 | 48 | 315 | 6 | 306 | Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
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| 5.83e-27 | 42 | 314 | 4 | 334 | Chain A, PECTATE LYASE E [Dickeya chrysanthemi] |
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| 8.36e-26 | 46 | 315 | 14 | 341 | Chain A, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi] |
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| 8.36e-26 | 46 | 315 | 14 | 341 | Chain A, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi] |
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| 2.73e-23 | 55 | 252 | 20 | 221 | Catalytic function and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.37e-104 | 4 | 333 | 6 | 319 | Probable pectate lyase A OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyA PE=3 SV=1 |
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| 1.94e-104 | 4 | 333 | 6 | 319 | Probable pectate lyase A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyA PE=3 SV=1 |
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| 2.94e-104 | 17 | 333 | 18 | 321 | Probable pectate lyase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=plyA PE=3 SV=1 |
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| 4.17e-104 | 17 | 333 | 18 | 321 | Pectate lyase A OS=Aspergillus niger OX=5061 GN=plyA PE=1 SV=1 |
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| 4.48e-103 | 48 | 333 | 38 | 319 | Probable pectate lyase A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000312 | 0.999660 | CS pos: 19-20. Pr: 0.9815 |