You are browsing environment: FUNGIDB
CAZyme Information: Bcin14g00850.1:RNA-p1
You are here: Home > Sequence: Bcin14g00850.1:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin14g00850.1:RNA-p1 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
|
|||||||||||
| Genome Property |
|
|||||||||||
| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:80 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 60 | 370 | 5.2e-71 | 0.9384615384615385 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 5.44e-129 | 64 | 382 | 1 | 321 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215540 | PLN03010 | 1.17e-24 | 104 | 356 | 124 | 359 | polygalacturonase |
| 178580 | PLN03003 | 1.01e-22 | 123 | 343 | 120 | 333 | Probable polygalacturonase At3g15720 |
| 227721 | Pgu1 | 3.71e-22 | 64 | 312 | 109 | 408 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| 215426 | PLN02793 | 3.01e-20 | 62 | 373 | 78 | 406 | Probable polygalacturonase |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 1.29e-231 | 1 | 382 | 1 | 382 | |
| 1.29e-231 | 1 | 382 | 1 | 382 | |
| 1.29e-231 | 1 | 382 | 1 | 382 | |
| 9.78e-228 | 1 | 377 | 1 | 377 | |
| 9.78e-228 | 1 | 377 | 1 | 377 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.68e-150 | 62 | 382 | 24 | 344 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
|
| 6.21e-150 | 63 | 379 | 17 | 334 | Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini] |
|
| 7.93e-150 | 62 | 382 | 16 | 336 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
|
| 2.11e-149 | 62 | 382 | 24 | 344 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
|
| 8.62e-138 | 62 | 382 | 20 | 339 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4.22e-202 | 1 | 382 | 1 | 380 | Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1 |
|
| 1.07e-151 | 62 | 382 | 55 | 376 | Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1 |
|
| 1.23e-151 | 62 | 382 | 58 | 380 | Polygalacturonase 2 OS=Penicillium olsonii OX=99116 GN=PG2 PE=3 SV=1 |
|
| 2.99e-148 | 63 | 379 | 43 | 358 | Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum OX=290576 GN=PG1 PE=3 SV=1 |
|
| 5.86e-146 | 63 | 382 | 44 | 364 | Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000269 | 0.999719 | CS pos: 20-21. Pr: 0.9883 |