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CAZyme Information: Bcin14g00610.1:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin14g00610.1:RNA-p1 | |||||||||||
| CAZy Family | GT2 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
Enzyme Prediction help
| EC | 3.2.1.15:80 |
|---|
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 44 | 374 | 4.1e-62 | 0.9661538461538461 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 5.04e-110 | 49 | 374 | 1 | 321 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 215540 | PLN03010 | 3.95e-23 | 89 | 359 | 124 | 371 | polygalacturonase |
| 227721 | Pgu1 | 5.41e-20 | 12 | 295 | 73 | 398 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| 177865 | PLN02218 | 5.72e-20 | 4 | 368 | 51 | 420 | polygalacturonase ADPG |
| 178580 | PLN03003 | 6.71e-19 | 33 | 292 | 35 | 288 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 2.44e-264 | 1 | 374 | 1 | 374 | |
| 2.44e-264 | 1 | 374 | 1 | 374 | |
| 2.44e-264 | 1 | 374 | 1 | 374 | |
| 2.44e-264 | 1 | 374 | 1 | 374 | |
| 2.44e-264 | 1 | 374 | 1 | 374 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3.34e-134 | 24 | 374 | 1 | 344 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.92e-133 | 24 | 374 | 1 | 344 | Chain A, endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.31e-132 | 32 | 371 | 1 | 334 | Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_B Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_C Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_D Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_E Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_F Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini],2IQ7_G Crystal structure of the polygalacturonase from Colletotrichum lupini and its implications for the interaction with polygalacturonase-inhibiting proteins [Colletotrichum lupini] |
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| 3.89e-131 | 32 | 374 | 1 | 336 | Chain A, Endo-polygalacturonase [Evansstolkia leycettana] |
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| 1.07e-121 | 34 | 374 | 4 | 339 | Polygalacturonase From Aspergillus Aculeatus [Aspergillus aculeatus],1IB4_A Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus],1IB4_B Crystal Structure of Polygalacturonase from Aspergillus Aculeatus at Ph4.5 [Aspergillus aculeatus] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.33e-142 | 1 | 374 | 1 | 380 | Endo-polygalacturonase OS=Sclerotinia sclerotiorum OX=5180 GN=PG1 PE=3 SV=1 |
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| 5.90e-132 | 7 | 374 | 9 | 376 | Polygalacturonase OS=Penicillium griseoroseum OX=84562 GN=PGG1 PE=3 SV=1 |
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| 2.98e-129 | 11 | 374 | 11 | 364 | Polygalacturonase OS=Cochliobolus carbonum OX=5017 GN=PGN1 PE=3 SV=1 |
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| 2.33e-128 | 1 | 371 | 1 | 358 | Endopolygalacturonase 1 OS=Colletotrichum lindemuthianum OX=290576 GN=PG1 PE=3 SV=1 |
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| 2.18e-126 | 5 | 374 | 6 | 363 | Probable endopolygalacturonase A OS=Aspergillus parasiticus OX=5067 GN=pgaA PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000254 | 0.999736 | CS pos: 31-32. Pr: 0.7371 |