CAZyme Information: Bcin13g02640.1:RNA-p1

Basic Information

• Species: Botrytis cinerea
• Lineage: Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea
• CAZyme ID: Bcin13g02640.1:RNA-p1
• CAZy Family: GT1
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
572		58758.08	4.5521

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_BcinereaB05-10	12073	332648	366	11707

• Gene Location: location=bcin_chr_13:907770-909659(-)

Full Sequence      

MQFGTLSALAAIVLPAVVSAQLTGSVGPLTSRESKATKVCSVLDYGGKASKTSDIGPALT
SAFAACKTGGTVYVPPGDYGMSTWITLSGGSAWALKLDGIIYRTGSDDGNMIMIKHTTDF
EMYSSTSAGAIQGYGYEFHKDGAYGARLLRFYDATNWSIHDIALVDAPQFHFSIDTCVNG
EVYNMIIRGGNEGGLDGIDVWGTNIWIHDVEVTNKDECVTVKNPSDHILIEDIYCNSSGG
CGMGSLGADTAISNIVYNNIYTYGSNQMYMIKSNGGSGTVSDCQFNNFIGRSNAYSLNIN
AAWPQASKASGNGVIYENLSFNNWKGTCTSTSERGPINLLCSSTAPCTNVTITDFAIGTE
SGSTGKYVCQNAYGSGGCLKADTDSPSAYTTTQSWSSMPTGYEASTMAQDLATPFAVSVS
IPIPTIPTSFFPGRTPVSALMANGGKSSASVASHVAITTSSKAAVATSTAVASSSKVAAT
SKASSSAAVVSASKTTLATQKSSTTLATSAKPAATTAASSSGSVPLYGSCTGGQSCSADG
GEVSSTEIASSVAPAPTDATDASGEEDDECEI

Enzyme Prediction     

EC	3.2.1.171:11

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	64	373	5.5e-50	0.9692307692307692

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
215540	PLN03010	6.39e-20	41	384	48	397	polygalacturonase
177865	PLN02218	7.80e-17	35	372	63	418	polygalacturonase ADPG
395231	Glyco_hydro_28	1.31e-14	147	372	86	315	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
215426	PLN02793	5.08e-14	149	375	180	412	Probable polygalacturonase
165802	PLN02155	2.78e-13	34	374	22	380	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
CCD54382.1|GH28	0.0	1	572	1	572
ATZ56427.1|GH28	0.0	1	572	1	572
AAB61358.1|GH28|3.2.1.171	0.0	1	572	1	572
APA08661.1|GH28	3.82e-287	1	459	1	460
QSZ36106.1|GH28	6.81e-255	1	445	1	445

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	6.11e-197	21	440	1	420	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
4C2L_A	9.72e-20	47	371	24	373	Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q00001|RHGA_ASPAC	7.87e-199	14	440	12	438	Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
sp|Q5ARE6|RHGA_EMENI	7.87e-196	15	496	12	487	Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2
sp|B0Y0Q3|RHGB_ASPFC	5.17e-195	14	441	15	444	Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1
sp|Q2TWN8|RHGB_ASPOR	3.05e-194	1	445	1	450	Probable rhamnogalacturonase B OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rhgB PE=3 SV=1
sp|Q4WV23|RHGB_ASPFU	8.42e-194	14	441	15	444	Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000224	0.999754	CS pos: 20-21. Pr: 0.9610

TMHMM  Annotations     

There is no transmembrane helices in Bcin13g02640.1:RNA-p1.