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CAZyme Information: Bcin12g02390.1:RNA-p1
You are here: Home > Sequence: Bcin12g02390.1:RNA-p1
Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin12g02390.1:RNA-p1 | |||||||||||
| CAZy Family | GH76 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 11 | 575 | 5.2e-163 | 0.9929577464788732 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 235000 | PRK02106 | 2.63e-114 | 11 | 580 | 5 | 537 | choline dehydrogenase; Validated |
| 225186 | BetA | 8.11e-106 | 8 | 576 | 4 | 535 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| 274888 | Rv0697 | 4.56e-59 | 13 | 575 | 2 | 487 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| 398739 | GMC_oxred_C | 4.69e-40 | 428 | 570 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
| 366272 | GMC_oxred_N | 3.77e-28 | 80 | 310 | 15 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 0.0 | 1 | 597 | 1 | 597 | |
| 0.0 | 1 | 597 | 1 | 596 | |
| 0.0 | 1 | 597 | 1 | 593 | |
| 4.10e-279 | 12 | 575 | 9 | 571 | |
| 4.10e-279 | 12 | 575 | 9 | 571 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.50e-73 | 8 | 575 | 3 | 570 | Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40],3Q9T_B Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40],3Q9T_C Crystal structure analysis of formate oxidase [Aspergillus oryzae RIB40] |
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| 2.09e-73 | 8 | 575 | 3 | 570 | Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU3_B Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU3_C Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40] |
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| 2.92e-73 | 8 | 575 | 3 | 570 | Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_B Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40],5ZU2_C Effect of mutation (R554A) on FAD modification in Aspergillus oryzae RIB40formate oxidase [Aspergillus oryzae RIB40] |
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| 8.73e-72 | 11 | 575 | 1 | 562 | Crystal structure of aryl-alcohol oxidase from Pleurotus eryngii in complex with p-anisic acid [Pleurotus eryngii] |
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| 1.25e-71 | 10 | 575 | 1 | 563 | Crystal structure of aryl-alcohol-oxidase from Pleurotus eryingii [Pleurotus eryngii] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2.53e-76 | 11 | 580 | 2 | 531 | Oxygen-dependent choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=betA PE=3 SV=1 |
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| 2.53e-76 | 11 | 576 | 2 | 527 | Oxygen-dependent choline dehydrogenase OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=betA PE=3 SV=2 |
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| 6.91e-76 | 11 | 580 | 2 | 531 | Oxygen-dependent choline dehydrogenase OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=betA PE=3 SV=1 |
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| 1.35e-75 | 11 | 580 | 2 | 531 | Oxygen-dependent choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) OX=347834 GN=betA PE=3 SV=1 |
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| 2.65e-75 | 11 | 576 | 2 | 527 | Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 1.000061 | 0.000008 |