CAZyme Information: Bcin12g01100.1:RNA-p1

Basic Information

• Species: Botrytis cinerea
• Lineage: Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea
• CAZyme ID: Bcin12g01100.1:RNA-p1
• CAZy Family: GH76
• CAZyme Description: unspecified product

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
444	bcin_chr_12|CGC8	46496.02	5.4723

Genome Property

Genome Version/Assembly ID	Genes	Strain NCBI Taxon ID	Non Protein Coding Genes	Protein Coding Genes
FungiDB-61_BcinereaB05-10	12073	332648	366	11707

• Gene Location: location=bcin_chr_12:370629-372358(-)

Full Sequence      

MKSSVFSFVTASLLALPALVAGQLSGTVGPTTTTAQKAATKICNILDYGGVASATTDNGP
AILAAWTACKSGGEVYIPTGSYGLGTWVTLTGGTSVSINLEGTIYRTGTAGGNMIFIEHT
SDFEFYSGNSKGAIQGYGYVFHSAGTYGPRILRLYQVTDFSVHGIVLVDSPAFHLTLDTC
TNGELYNLVVRGGNEGGLDGVDIWGTNIWAHDIEVTNKDECVTVKSPASYVLVENIYCNW
SGGSAIGSLGADTAISNIYYNHVYSQNCNQMMMIKSNGGSGSLTGATFNNFMGHSNAYTL
DIDSAWSGQSVVAGSGVTYSDLTFSHWHGTCANGAARAPIQLFCPAAIPCKDITISSFYI
WTDTGSSELYKCNNAYGSGPCLKTGTTYTTYTSTGTVTSVPTASYAYTTMPGEISSGLGI
TKSIPIPTHPVSYFPGIAPYSALA

Enzyme Prediction     

EC	3.2.1.171:11

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH28	68	376	6.4e-48	0.9661538461538461

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
215540	PLN03010	1.08e-22	44	377	48	391	polygalacturonase
395231	Glyco_hydro_28	7.82e-15	149	375	85	315	Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865	PLN02218	4.03e-14	44	375	69	418	polygalacturonase ADPG
178580	PLN03003	2.26e-13	44	367	25	364	Probable polygalacturonase At3g15720
165802	PLN02155	3.38e-12	42	377	27	380	polygalacturonase

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATZ55521.1|GH28	0.0	1	444	1	444
CCD53740.1|GH28	0.0	1	444	1	444
APA12794.1|GH28	2.36e-302	1	444	1	444
QSZ30244.1|GH28	1.54e-289	1	443	1	443
AAA64367.1|GH28|3.2.1.171	6.79e-201	12	444	8	439

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
1RMG_A	4.46e-198	23	444	1	421	Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus]
1HG8_A	7.14e-06	199	381	167	347	Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
sp|Q00001|RHGA_ASPAC	4.89e-201	12	444	8	439	Rhamnogalacturonase A OS=Aspergillus aculeatus OX=5053 GN=rhgA PE=1 SV=1
sp|B0Y0Q3|RHGB_ASPFC	2.91e-188	7	443	5	443	Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=rhgB PE=3 SV=1
sp|Q4WV23|RHGB_ASPFU	5.85e-188	7	443	5	443	Probable rhamnogalacturonase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=rhgB PE=3 SV=1
sp|A1DED1|RHGB_NEOFI	3.25e-186	7	443	5	443	Probable rhamnogalacturonase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=rhgB PE=3 SV=1
sp|Q5ARE6|RHGA_EMENI	1.28e-183	13	444	8	439	Rhamnogalacturonase A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=rhgA PE=2 SV=2

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	CS Position
0.000309	0.999656	CS pos: 22-23. Pr: 0.9693

TMHMM  Annotations     

There is no transmembrane helices in Bcin12g01100.1:RNA-p1.