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CAZyme Information: Bcin06g02140.1:RNA-p1
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Botrytis cinerea | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea | |||||||||||
| CAZyme ID | Bcin06g02140.1:RNA-p1 | |||||||||||
| CAZy Family | GH152 | |||||||||||
| CAZyme Description | unspecified product | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | ||||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 53 | 402 | 4.4e-62 | 0.963076923076923 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| 395231 | Glyco_hydro_28 | 4.30e-28 | 114 | 409 | 47 | 321 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| 177865 | PLN02218 | 2.20e-25 | 40 | 400 | 81 | 417 | polygalacturonase ADPG |
| 215540 | PLN03010 | 3.11e-22 | 40 | 389 | 60 | 378 | polygalacturonase |
| 215120 | PLN02188 | 2.37e-17 | 40 | 401 | 50 | 390 | polygalacturonase/glycoside hydrolase family protein |
| 178580 | PLN03003 | 4.23e-17 | 126 | 411 | 119 | 385 | Probable polygalacturonase At3g15720 |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| 8.26e-310 | 1 | 413 | 1 | 413 | |
| 4.78e-309 | 1 | 413 | 1 | 413 | |
| 2.41e-277 | 1 | 413 | 1 | 413 | |
| 1.26e-270 | 1 | 411 | 1 | 412 | |
| 2.44e-152 | 27 | 411 | 64 | 451 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7.43e-32 | 27 | 410 | 15 | 383 | Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis [Aspergillus tubingensis] |
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| 2.67e-12 | 115 | 396 | 66 | 342 | Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides] |
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| 1.96e-08 | 38 | 403 | 32 | 355 | Rhamnogalacturonase A From Aspergillus Aculeatus [Aspergillus aculeatus] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1.37e-153 | 27 | 411 | 30 | 417 | Alpha-L-rhamnosidase rgxB OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxB PE=2 SV=2 |
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| 1.90e-78 | 22 | 400 | 23 | 428 | Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger OX=5061 GN=rgxA PE=2 SV=1 |
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| 7.48e-78 | 22 | 400 | 23 | 428 | Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=rgxA PE=2 SV=2 |
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| 4.04e-77 | 19 | 409 | 19 | 435 | Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=rgxA PE=3 SV=2 |
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| 4.04e-77 | 19 | 409 | 19 | 435 | Putative galacturan 1,4-alpha-galacturonidase A OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=rgxA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | CS Position |
|---|---|---|
| 0.000224 | 0.999782 | CS pos: 28-29. Pr: 0.6299 |