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CAZyme Information: Bcin04g04930.1:RNA-p1

You are here: Home > Sequence: Bcin04g04930.1:RNA-p1

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Botrytis cinerea
Lineage Ascomycota; Leotiomycetes; ; Sclerotiniaceae; Botrytis; Botrytis cinerea
CAZyme ID Bcin04g04930.1:RNA-p1
CAZy Family CE8
CAZyme Description unspecified product
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
514 50721.53 4.2545
Genome Property
Genome Version/Assembly ID Genes Strain NCBI Taxon ID Non Protein Coding Genes Protein Coding Genes
FungiDB-61_BcinereaB05-10 12073 332648 366 11707
Gene Location

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.15:14 3.1.1.11:1

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 183 502 1.1e-72 0.9323076923076923

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
395231 Glyco_hydro_28 5.18e-121 185 512 1 319
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
177865 PLN02218 2.05e-24 237 504 157 416
polygalacturonase ADPG
215426 PLN02793 1.93e-22 330 505 226 406
Probable polygalacturonase
178580 PLN03003 2.04e-19 248 503 123 368
Probable polygalacturonase At3g15720
215540 PLN03010 4.30e-19 330 507 206 388
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
2.13e-306 1 514 1 514
2.13e-306 1 514 1 514
2.13e-306 1 514 1 514
2.13e-306 1 514 1 514
2.13e-306 1 514 1 514

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6.13e-154 171 514 4 349
Endopolygalacturonase from the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]
6.75e-98 175 509 13 340
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
6.75e-98 175 509 13 340
Chain A, endo-polygalacturonase [Evansstolkia leycettana]
2.07e-97 175 509 5 332
Chain A, Endo-polygalacturonase [Evansstolkia leycettana]
1.03e-94 171 509 4 332
Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_B Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_C Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_D Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_E Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger],1NHC_F Structural insights into the processivity of endopolygalacturonase I from Aspergillus niger [Aspergillus niger]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1.40e-167 2 513 3 492
Probable endopolygalacturonase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) OX=510516 GN=pgaD PE=3 SV=2
3.98e-167 2 513 3 492
Probable endopolygalacturonase D OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=pgaD PE=3 SV=1
7.16e-166 1 513 1 495
Probable endopolygalacturonase D OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) OX=425011 GN=pgaD PE=3 SV=1
7.16e-166 1 513 1 495
Endopolygalacturonase D OS=Aspergillus niger OX=5061 GN=pgaD PE=3 SV=1
3.99e-162 1 512 1 469
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI CS Position
0.000599 0.999408 CS pos: 16-17. Pr: 0.9284

TMHMM  Annotations      help

There is no transmembrane helices in Bcin04g04930.1:RNA-p1.